Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007600 Vanilla planifolia HOM05D006073 ORTHO05D007354 1.1e-60 236.5 122 100.0
TAR362G0748 Trochodendron aralioides HOM05D006073 ORTHO05D007354 3.7e-37 158.3 112 67.0
PSO832G0210 Papaver somniferum HOM05D006073 ORTHO05D007354 1.1e-36 156.8 116 67.2
MD04G1247200 Malus domestica HOM05D006073 ORTHO05D007354 1.4e-36 156.4 111 69.4
PSO210G7364 Papaver somniferum HOM05D006073 ORTHO05D007354 1.4e-36 156.4 116 67.2
GSVIVG01019056001 Vitis vinifera HOM05D006073 ORTHO05D007354 1.4e-36 156.4 112 68.8
CDE02G4281 Ceratophyllum demersum HOM05D006073 ORTHO05D007354 3.2e-36 155.2 112 67.0
Os11g0265400 Oryza sativa ssp. japonica HOM05D006073 ORTHO05D007354 3.2e-36 155.2 113 69.0
Carub.0003s0250 Capsella rubella HOM05D006073 ORTHO05D007354 7.1e-36 154.1 112 64.3
Duzib177G0479 Durio zibethinus HOM05D006073 ORTHO05D007354 1.2e-35 153.3 113 66.4
Hma1.2p1_0220F.1_g092975 Hydrangea macrophylla HOM05D006073 ORTHO05D007354 1.2e-35 153.3 112 68.8
Sabra13G0079000 Salix brachista HOM05D006073 ORTHO05D007354 2.1e-35 152.5 111 67.6
Phvul.008G052300 Phaseolus vulgaris HOM05D006073 ORTHO05D007354 2.7e-35 152.1 110 67.3
Lj1g0021473 Lotus japonicus HOM05D006073 ORTHO05D007354 4.6e-35 151.4 112 65.2
Sp3g02360 Schrenkiella parvula HOM05D006073 ORTHO05D007354 4.6e-35 151.4 109 66.1
Ca_08006_v3 Cicer arietinum L. HOM05D006073 ORTHO05D007354 6.0e-35 151.0 112 65.2
Glyma.18G244400 Glycine max HOM05D006073 ORTHO05D007354 6.0e-35 151.0 110 67.3
VMungo1383G1723 Vigna mungo HOM05D006073 ORTHO05D007354 6.0e-35 151.0 110 66.4
Gohir.D13G093300 Gossypium hirsutum HOM05D006073 ORTHO05D007354 1.7e-34 149.4 119 60.5
Gorai.010G140700 Gossypium raimondii HOM05D006073 ORTHO05D007354 1.7e-34 149.4 119 60.5
Manes.12G003200 Manihot esculenta HOM05D006073 ORTHO05D007354 1.7e-34 149.4 110 62.7
Medtr7g080410 Medicago truncatula HOM05D006073 ORTHO05D007354 1.7e-34 149.4 110 65.5
Aqoxy5G00030 Aquilegia oxysepala HOM05D006073 ORTHO05D007354 2.3e-34 149.1 113 65.5
FAN05G2946 Fragaria x ananassa HOM05D006073 ORTHO05D007354 2.3e-34 149.1 110 65.5
Thecc.05G186400 Theobroma cacao HOM05D006073 ORTHO05D007354 2.3e-34 149.1 113 64.6
Ciclev10012181m.g Citrus clementina HOM05D006073 ORTHO05D007354 3.0e-34 148.7 114 63.2
Dinv29081 Davidia involucrata HOM05D006073 ORTHO05D007354 3.0e-34 148.7 111 68.5
Gohir.A13G089700 Gossypium hirsutum HOM05D006073 ORTHO05D007354 3.0e-34 148.7 113 63.7
Oeu062042.2 Olea europaea HOM05D006073 ORTHO05D007354 3.0e-34 148.7 112 65.2
Potri.013G084100 Populus trichocarpa HOM05D006073 ORTHO05D007354 3.0e-34 148.7 111 65.8
THA.LOC104820846 Tarenaya hassleriana HOM05D006073 ORTHO05D007354 3.0e-34 148.7 111 64.0
TPR.G32007 Trifolium pratense HOM05D006073 ORTHO05D007354 3.9e-34 148.3 110 65.5
Lalb_Chr01g0020611 Lupinus albus HOM05D006073 ORTHO05D007354 5.1e-34 147.9 110 65.5
Manes.13G003100 Manihot esculenta HOM05D006073 ORTHO05D007354 5.1e-34 147.9 110 61.8
ATR0743G237 Amborella trichopoda HOM05D006073 ORTHO05D007354 6.6e-34 147.5 113 67.3
Glyma.09G248400 Glycine max HOM05D006073 ORTHO05D007354 6.6e-34 147.5 110 64.5
HanXRQChr16g0511831 Helianthus annuus HOM05D006073 ORTHO05D007354 6.6e-34 147.5 112 66.1
Sc16g0010500 Simmondsia chinensis HOM05D006073 ORTHO05D007354 6.6e-34 147.5 112 65.2
AL3G12960 Arabidopsis lyrata HOM05D006073 ORTHO05D007354 8.6e-34 147.1 112 61.6
CSS0044721 Camellia sinensis var. sinensis HOM05D006073 ORTHO05D007354 8.6e-34 147.1 111 67.6
Thhalv10021121m.g Eutrema salsugineum HOM05D006073 ORTHO05D007354 8.6e-34 147.1 109 64.2
BcaC05g30280 Brassica carinata HOM05D006073 ORTHO05D007354 1.1e-33 146.7 109 64.2
A05p43850 Brassica napus HOM05D006073 ORTHO05D007354 1.1e-33 146.7 109 64.2
C05p63440 Brassica napus HOM05D006073 ORTHO05D007354 1.1e-33 146.7 109 64.2
BolC5t35008H Brassica oleracea HOM05D006073 ORTHO05D007354 1.1e-33 146.7 109 64.2
PGR031G2992 Punica granatum HOM05D006073 ORTHO05D007354 1.1e-33 146.7 112 65.2
AT3G03330 Arabidopsis thaliana HOM05D006073 ORTHO05D007354 1.5e-33 146.4 112 61.6
CARHR077370 Cardamine hirsuta HOM05D006073 ORTHO05D007354 1.5e-33 146.4 109 64.2
Rhsim05G0165500 Rhododendron simsii HOM05D006073 ORTHO05D007354 1.9e-33 146.0 111 65.8
Eucgr.B01463 Eucalyptus grandis HOM05D006073 ORTHO05D007354 3.3e-33 145.2 113 65.5
Actinidia03261 Actinidia chinensis HOM05D006073 ORTHO05D007354 4.3e-33 144.8 111 66.7
Cc09_g03950 Coffea canephora HOM05D006073 ORTHO05D007354 4.3e-33 144.8 112 65.2
CSS0026124 Camellia sinensis var. sinensis HOM05D006073 ORTHO05D007354 5.6e-33 144.4 111 65.8
Psat3g102360 Pisum sativum HOM05D006073 ORTHO05D007354 5.6e-33 144.4 110 62.7
SalBow6G2286 Salvia bowleyana HOM05D006073 ORTHO05D007354 5.6e-33 144.4 111 64.0
Atru.chr12.1709 Acer truncatum HOM05D006073 ORTHO05D007354 7.3e-33 144.1 113 63.7
Lsat_1_v5_gn_0_14680 Lactuca sativa HOM05D006073 ORTHO05D007354 7.3e-33 144.1 108 67.6
Nn7g37577 Nelumbo nucifera HOM05D006073 ORTHO05D007354 1.2e-32 143.3 111 62.2
PSO832G4099 Papaver somniferum HOM05D006073 ORTHO05D007354 1.6e-32 142.9 110 63.6
Atru.chr12.1713 Acer truncatum HOM05D006073 ORTHO05D007354 3.6e-32 141.7 113 61.9
EL10Ac4g10008 Beta vulgaris HOM05D006073 ORTHO05D007354 3.6e-32 141.7 111 63.1
Aa31LG5G13860 Aethionema arabicum HOM05D006073 ORTHO05D007354 6.2e-32 141.0 107 62.6
arahy.Tifrunner.gnm1.ann1.8XTP9K Arachis hypogaea HOM05D006073 ORTHO05D007354 6.2e-32 141.0 111 65.8
Aa31LG5G13870 Aethionema arabicum HOM05D006073 ORTHO05D007354 8.1e-32 140.6 108 62.0
Cfa006241 Carpinus fangiana HOM05D006073 ORTHO05D007354 8.1e-32 140.6 113 63.7
Peaxi162Scf00619g00047 Petunia axillaris HOM05D006073 ORTHO05D007354 8.1e-32 140.6 112 61.6
MSTRG.8201 Avicennia marina HOM05D006073 ORTHO05D007354 1.1e-31 140.2 110 61.8
Aa31LG5G13770 Aethionema arabicum HOM05D006073 ORTHO05D007354 1.4e-31 139.8 107 61.7
arahy.Tifrunner.gnm1.ann1.T416DT Arachis hypogaea HOM05D006073 ORTHO05D007354 1.4e-31 139.8 111 64.9
CAN.G29.19 Capsicum annuum HOM05D006073 ORTHO05D007354 1.8e-31 139.4 110 61.8
AUR62006634 Chenopodium quinoa HOM05D006073 ORTHO05D007354 2.4e-31 139.0 111 62.2
CANSAT54G1250 Cannabis sativa HOM05D006073 ORTHO05D007354 4.0e-31 138.3 113 60.2
FvH4_6g00210 Fragaria vesca HOM05D006073 ORTHO05D007354 5.2e-31 137.9 111 62.2
FAN02G0094 Fragaria x ananassa HOM05D006073 ORTHO05D007354 5.2e-31 137.9 111 62.2
FAN09G2337 Fragaria x ananassa HOM05D006073 ORTHO05D007354 5.2e-31 137.9 111 62.2
FAN14G3812 Fragaria x ananassa HOM05D006073 ORTHO05D007354 5.2e-31 137.9 111 62.2
Hund07366 Selenicereus undatus HOM05D006073 ORTHO05D007354 5.2e-31 137.9 109 61.5
TWI36G0432 Tripterygium wilfordii HOM05D006073 ORTHO05D007354 5.2e-31 137.9 111 63.1
TWI36G1249 Tripterygium wilfordii HOM05D006073 ORTHO05D007354 5.2e-31 137.9 111 63.1
ClCG11G009880 Citrullus lanatus HOM05D006073 ORTHO05D007354 8.9e-31 137.1 113 60.2
CsaV3_2G010510 Cucumis sativus L. HOM05D006073 ORTHO05D007354 8.9e-31 137.1 113 60.2
ECA232G0690 Erigeron canadensis HOM05D006073 ORTHO05D007354 8.9e-31 137.1 109 64.2
RcHm_v2.0_Chr3g0447581 Rosa chinensis HOM05D006073 ORTHO05D007354 1.2e-30 136.7 111 61.3
Prupe.6G363500 Prunus persica HOM05D006073 ORTHO05D007354 2.6e-30 135.6 111 63.1
Solyc04g024590.3 Solanum lycopersicum HOM05D006073 ORTHO05D007354 5.8e-30 134.4 112 58.9
Sopen04g010570 Solanum pennellii HOM05D006073 ORTHO05D007354 5.8e-30 134.4 112 58.9
PSO063G7544 Papaver somniferum HOM05D006073 ORTHO05D007354 7.6e-30 134.0 110 60.9
Sed0013853 Sechium edule HOM05D006073 ORTHO05D007354 3.8e-29 131.7 113 54.9
SGA_v2.0_scaffold340G49309 Striga asiatica HOM05D006073 ORTHO05D007354 1.4e-28 129.8 111 58.6
A05p43860 Brassica napus HOM05D006073 ORTHO05D007354 2.1e-27 125.9 103 59.2
BraA05t23123Z Brassica rapa HOM05D006073 ORTHO05D007354 2.1e-27 125.9 103 59.2
Nitab4.5_0001449g0050 Nicotiana tabacum HOM05D006073 ORTHO05D007354 2.7e-27 125.6 112 59.8
Hund21916 Selenicereus undatus HOM05D006073 ORTHO05D007354 8.7e-26 120.6 85 72.9
C05p63450 Brassica napus HOM05D006073 ORTHO05D007354 1.9e-25 119.4 97 61.9
Haze_04592 Corylus avellana HOM05D006073 ORTHO05D007354 3.3e-25 118.6 103 58.3
BolC5t35009H Brassica oleracea HOM05D006073 ORTHO05D007354 4.3e-25 118.2 97 61.9
Nitab4.5_0000080g0330 Nicotiana tabacum HOM05D006073 ORTHO05D007354 5.6e-25 117.9 84 66.7
AUR62000286 Chenopodium quinoa HOM05D006073 ORTHO05D007354 6.2e-24 114.4 85 64.7
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 1.3e-21 106.7 81 67.9
Pp3c3_9390 Physcomitrium patens HOM05D006073 ORTHO05D007354 3.2e-20 102.1 108 44.4
EL10Ac2g04037 Beta vulgaris HOM05D006073 ORTHO05D007354 1.6e-19 99.8 94 51.1
CBR_g30337 Chara braunii HOM05D006073 ORTHO05D007354 1.6e-19 99.8 116 45.7
SEGI_30995 Sequoiadendron giganteum HOM05D006073 ORTHO05D007354 2.3e-18 95.9 79 57.0
AagrBONN_evm.TU.Sc2ySwM_117.4049 Anthoceros agrestis HOM05D006073 ORTHO05D007354 1.1e-17 93.6 107 43.0
Pp3c26_14890 Physcomitrium patens HOM05D006073 ORTHO05D007354 2.8e-16 89.0 108 38.0
C03p47590 Brassica napus HOM05D037797 ORTHO05D033147 6.2e-16 87.8 54 72.2
BcaC01g03883 Brassica carinata HOM05D000223 ORTHO05D000736 1.8e-15 86.3 53 71.7
MELO3C008568.2 Cucumis melo HOM05D006073 ORTHO05D007354 1.8e-15 86.3 113 46.0
BraA01t03069Z Brassica rapa HOM05D006073 ORTHO05D007354 4.0e-15 85.1 52 73.1
BolC3t12723H Brassica oleracea HOM05D006073 ORTHO05D007354 9.0e-15 84.0 52 71.2
CiPaw.08G114000 Carya illinoinensis HOM05D006073 ORTHO05D007354 2.0e-14 82.8 66 68.2
QL01p048130 Quercus lobata HOM05D006073 ORTHO05D007354 7.6e-14 80.9 63 68.3
Lj1A584G28 Lonicera japonica HOM05D006073 ORTHO05D007354 4.9e-13 78.2 63 60.3
Cpa.g.c39194 Carica papaya HOM05D006073 ORTHO05D007354 7.1e-12 74.3 51 64.7
BcaC05g30281 Brassica carinata HOM05D006073 ORTHO05D007354 1.2e-11 73.6 60 63.3
CiPaw.08G113900 Carya illinoinensis HOM05D006073 ORTHO05D007354 6.0e-11 71.2 51 62.7
Mapoly0061s0007 Marchantia polymorpha HOM05D006073 ORTHO05D007354 1.0e-10 70.5 86 38.4
QL01p048139 Quercus lobata HOM05D011240 ORTHO05D014254 1.8e-10 69.7 51 58.8
Cre02.g103100 Chlamydomonas reinhardtii HOM05D006073 ORTHO05D007354 6.7e-10 67.8 116 31.0
MCO05G165 Micromonas commoda HOM05D006073 ORTHO05D007354 6.2e-08 61.2 100 33.0


User provided reference genes

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