Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 9.8e-106 386.7 185 100.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.0e-70 270.4 175 66.3
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 5.1e-70 268.1 175 66.9
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 2.5e-69 265.8 176 65.3
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 3.3e-69 265.4 179 63.7
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-68 262.3 176 64.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.1e-67 258.8 182 61.5
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.3e-67 258.1 179 62.0
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 9.0e-67 257.3 175 64.0
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.5e-66 256.5 175 64.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.5e-66 256.5 179 64.8
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.0e-66 256.1 175 63.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.6e-66 255.8 179 63.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.4e-66 255.4 171 65.5
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 4.5e-66 255.0 176 64.8
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 4.5e-66 255.0 176 63.6
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 4.5e-66 255.0 179 64.2
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 5.8e-66 254.6 182 61.0
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 5.8e-66 254.6 184 62.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 9.9e-66 253.8 182 60.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.2e-65 252.7 181 63.5
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.9e-65 252.3 175 67.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 6.4e-65 251.1 177 62.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.1e-64 250.4 183 61.7
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.9e-64 249.6 182 61.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.2e-64 248.8 176 60.8
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.2e-64 248.4 184 65.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 4.2e-64 248.4 181 64.1
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 4.2e-64 248.4 175 63.4
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 5.5e-64 248.1 179 63.1
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 7.1e-64 247.7 177 63.3
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.2e-63 246.9 181 62.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.6e-63 246.5 185 60.5
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.6e-63 246.5 185 60.5
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.6e-63 246.5 178 60.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.6e-63 246.5 184 63.0
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.6e-63 245.0 179 61.5
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 6.0e-63 244.6 180 63.3
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.0e-62 243.8 176 60.8
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.0e-62 243.8 175 61.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.3e-62 243.4 176 62.5
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.3e-62 242.7 176 60.2
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 3.9e-62 241.9 175 62.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 6.7e-62 241.1 188 60.1
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 6.7e-62 241.1 175 61.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 8.7e-62 240.7 176 62.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.5e-61 240.0 183 60.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.5e-61 240.0 181 58.0
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.5e-61 240.0 179 63.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.5e-61 240.0 176 59.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.9e-61 239.6 181 59.7
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.5e-61 239.2 184 58.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.3e-61 238.8 181 57.5
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 3.3e-61 238.8 178 59.6
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.3e-61 238.4 199 57.8
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 5.6e-61 238.0 177 62.7
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.6e-61 238.0 174 61.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 9.6e-61 237.3 181 61.3
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.6e-60 236.5 175 58.9
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.6e-60 236.5 184 59.8
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.1e-60 236.1 177 60.5
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.1e-60 236.1 180 60.6
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.1e-60 236.1 181 55.8
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 4.8e-60 235.0 186 57.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 8.1e-60 234.2 176 61.4
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 8.1e-60 234.2 177 59.3
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.3e-59 231.5 176 61.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.2e-58 230.3 180 59.4
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.0e-58 229.6 159 62.3
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.6e-58 229.2 174 59.8
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 3.4e-58 228.8 193 56.5
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 3.4e-58 228.8 159 65.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 4.5e-58 228.4 176 57.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.6e-58 227.6 179 60.3
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.0e-57 227.3 161 62.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.0e-57 227.3 167 61.1
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.9e-57 225.7 176 58.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 6.5e-57 224.6 177 57.6
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 8.4e-57 224.2 175 60.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.9e-56 223.0 177 57.1
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.5e-56 222.6 175 60.6
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.5e-56 222.6 178 56.7
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 3.2e-56 222.2 182 59.3
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 3.2e-56 222.2 182 59.3
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 7.1e-56 221.1 176 56.8
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.6e-55 219.9 179 56.4
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.6e-55 219.9 181 55.8
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.1e-55 219.5 172 58.1
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 4.6e-55 218.4 175 54.9
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.6e-55 218.4 176 55.7
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 4.6e-55 218.4 181 54.1
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 6.0e-55 218.0 175 58.9
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 6.0e-55 218.0 175 58.9
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.0e-54 217.2 179 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.8e-54 216.5 175 58.9
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 8.7e-54 214.2 194 53.6
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 7.4e-53 211.1 161 59.0
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.3e-52 210.3 178 52.8
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.8e-51 206.5 161 60.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.8e-51 206.5 175 54.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 5.3e-51 204.9 173 59.0
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 9.0e-51 204.1 175 56.0
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 9.0e-51 204.1 178 56.7
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 7.6e-50 201.1 163 55.2
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-49 200.3 177 54.2
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.3e-49 200.3 136 65.4
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.4e-48 196.8 175 54.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.5e-48 196.1 150 60.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.2e-48 195.7 159 57.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.7e-47 192.6 173 48.6
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 7.4e-45 184.5 129 63.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.8e-44 181.8 188 48.9
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 4.8e-44 181.8 128 63.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-41 172.9 168 49.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.2e-41 172.9 128 57.0
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-41 172.2 168 48.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.5e-41 171.4 166 49.4
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.2e-40 169.1 162 51.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.6e-39 165.2 112 64.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-38 163.3 152 51.3
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.3e-37 159.1 163 47.2
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 5.7e-37 158.3 184 43.5
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-35 153.7 140 51.4
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.4e-32 143.7 188 39.9
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-32 143.3 171 44.4
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.2e-32 142.1 107 59.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 9.4e-32 141.0 179 40.8
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 9.4e-32 141.0 180 40.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.1e-31 139.8 125 52.8
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-31 139.4 168 42.9
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.2e-26 124.0 89 62.9
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.9e-25 119.4 84 60.7
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 8.5e-25 117.9 183 37.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-18 96.3 95 47.4
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.2e-16 89.4 117 40.2
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.5e-08 63.9 123 35.8
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-08 63.9 53 54.7
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.9e-08 63.5 47 59.6
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.2e-08 61.6 46 58.7
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.1e-07 60.1 45 55.6
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.0e-06 57.8 45 53.3
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 5.2e-06 55.5 45 48.9


User provided reference genes

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