Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 6.7e-207 723.8 365 100.0
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 5.9e-46 189.1 355 39.7
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 2.1e-43 180.6 371 38.0
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 2.3e-42 177.2 365 38.4
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 4.0e-42 176.4 373 38.9
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 4.4e-41 172.9 377 35.3
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 5.7e-41 172.6 372 37.4
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 5.7e-41 172.6 375 37.3
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 7.5e-41 172.2 378 38.6
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 1.3e-40 171.4 368 37.5
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.7e-40 171.0 389 36.8
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 1.7e-40 171.0 371 37.5
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 3.7e-40 169.9 375 37.3
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 6.4e-40 169.1 374 36.9
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 6.4e-40 169.1 377 34.7
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 8.3e-40 168.7 362 35.6
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 8.3e-40 168.7 407 34.2
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 1.1e-39 168.3 379 36.1
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 2.4e-39 167.2 389 36.8
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 2.4e-39 167.2 375 36.3
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 3.2e-39 166.8 378 34.4
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 2.0e-38 164.1 407 33.9
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 5.9e-38 162.5 393 34.1
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 7.8e-38 162.2 354 36.7
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 2.3e-37 160.6 376 35.4
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 2.3e-37 160.6 397 35.0
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 3.0e-37 160.2 405 33.8
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 3.0e-37 160.2 327 39.4
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 3.0e-37 160.2 383 34.7
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 3.9e-37 159.8 393 32.8
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 3.9e-37 159.8 405 33.3
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 6.6e-37 159.1 383 35.8
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.5e-36 157.9 383 35.5
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 1.5e-36 157.9 394 36.0
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 3.3e-36 156.8 404 33.9
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 5.6e-36 156.0 400 32.8
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 9.5e-36 155.2 366 36.6
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 9.5e-36 155.2 415 35.4
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 1.2e-35 154.8 370 37.8
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 2.1e-35 154.1 385 33.2
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 2.8e-35 153.7 353 36.5
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 2.8e-35 153.7 368 35.6
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 8.0e-35 152.1 373 34.9
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 8.0e-35 152.1 338 34.9
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 1.0e-34 151.8 376 36.4
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 5.2e-34 149.4 382 33.2
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 6.8e-34 149.1 384 34.1
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 8.9e-34 148.7 388 32.7
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 1.2e-33 148.3 376 34.3
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 1.5e-33 147.9 405 33.1
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 2.0e-33 147.5 368 32.1
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 3.4e-33 146.7 373 33.5
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 3.4e-33 146.7 341 33.7
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 4.4e-33 146.4 380 33.2
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 2.2e-32 144.1 345 34.2
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 2.9e-32 143.7 373 34.6
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 3.7e-32 143.3 385 35.1
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 4.9e-32 142.9 311 34.4
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 4.9e-32 142.9 425 33.2
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 5.4e-31 139.4 383 33.7
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 5.4e-31 139.4 406 32.8
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 5.4e-31 139.4 405 33.3
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 7.0e-31 139.0 377 34.2
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 7.0e-31 139.0 314 33.8
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 1.6e-30 137.9 365 34.2
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 6.0e-30 136.0 347 33.4
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 7.8e-30 135.6 402 32.3
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.3e-29 134.8 374 31.8
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.3e-29 134.8 374 31.8
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 1.3e-29 134.8 383 33.7
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 1.7e-29 134.4 351 33.0
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 2.3e-29 134.0 336 32.7
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 3.9e-29 133.3 318 35.8
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 5.0e-29 132.9 368 32.6
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 6.6e-29 132.5 323 36.2
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 8.6e-29 132.1 380 31.8
Zm00001eb149010 Zea mays HOM05D007537 ORTHO05D009602 4.3e-28 129.8 263 40.3
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 7.3e-28 129.0 324 36.4
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 3.6e-27 126.7 386 33.4
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 4.7e-27 126.3 209 40.7
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 9.8e-25 118.6 394 31.7
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 1.0e-21 108.6 309 31.1
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.7e-21 107.8 289 32.9
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 3.6e-19 100.1 273 35.5
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 3.6e-19 100.1 274 34.7
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 2.3e-18 97.4 411 28.5
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 8.9e-18 95.5 268 34.7
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 1.2e-17 95.1 319 28.2
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 8.4e-16 89.0 139 38.8
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 7.3e-12 75.9 99 43.4
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 1.2e-11 75.1 337 27.6
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 1.8e-10 71.2 380 24.5
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 3.4e-09 67.0 383 24.0
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.4e-07 61.6 383 23.8
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.4e-07 61.6 383 23.8
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 4.6e-06 56.6 117 35.9
CSS0001975 Camellia sinensis var. sinensis HOM05D000206 ORTHO05D002004 6.0e-06 56.2 259 26.3


User provided reference genes

Program Settings