Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007452 Vanilla planifolia HOM05D002007 ORTHO05D005759 5.5e-90 334.3 176 100.0
HPP92_027661 Vanilla planifolia HOM05D002007 ORTHO05D005759 1.5e-74 283.1 168 89.9
HPP92_022732 Vanilla planifolia HOM05D002007 ORTHO05D005759 5.6e-34 148.3 158 53.2
HPP92_022745 Vanilla planifolia HOM05D002007 ORTHO05D005759 5.6e-34 148.3 158 53.2
Nn3g19126 Nelumbo nucifera HOM05D002007 ORTHO05D005759 1.0e-27 127.5 170 41.8
TAR629G0178 Trochodendron aralioides HOM05D002007 ORTHO05D005759 8.7e-27 124.4 168 39.9
PSO782G5315 Papaver somniferum HOM05D002007 ORTHO05D005759 3.3e-26 122.5 167 40.1
CiPaw.05G148700 Carya illinoinensis HOM05D002007 ORTHO05D005759 4.3e-26 122.1 159 40.3
Cpa.g.sc579.3 Carica papaya HOM05D002007 ORTHO05D005759 5.6e-26 121.7 163 41.7
Nn1g09291 Nelumbo nucifera HOM05D002007 ORTHO05D005759 9.6e-26 120.9 159 40.9
Haze_08040 Corylus avellana HOM05D002007 ORTHO05D005759 2.1e-25 119.8 151 43.7
Haze_08050 Corylus avellana HOM05D002007 ORTHO05D005759 2.1e-25 119.8 151 43.7
Sed0024576 Sechium edule HOM05D002007 ORTHO05D005759 3.6e-25 119.0 170 41.2
Aqoxy3G01987 Aquilegia oxysepala HOM05D002007 ORTHO05D005759 8.1e-25 117.9 157 38.2
CANSAT35G0197 Cannabis sativa HOM05D002007 ORTHO05D005759 8.1e-25 117.9 170 40.6
Thecc.03G321300 Theobroma cacao HOM05D002007 ORTHO05D005759 8.1e-25 117.9 164 38.4
VMungo1215G3059 Vigna mungo HOM05D002007 ORTHO05D005759 1.1e-24 117.5 161 41.0
Glyma.09G217800 Glycine max HOM05D002007 ORTHO05D005759 2.4e-24 116.3 161 40.4
Phvul.002G122900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 2.4e-24 116.3 161 41.0
MBI04_g30804_MAGBIO Magnolia biondii HOM05D002007 ORTHO05D005759 3.1e-24 115.9 159 39.0
PGR042G3326 Punica granatum HOM05D002007 ORTHO05D005759 3.1e-24 115.9 159 40.9
VMungo0251G0075 Vigna mungo HOM05D002007 ORTHO05D005759 4.0e-24 115.5 167 38.3
Glyma.01G152600 Glycine max HOM05D002007 ORTHO05D005759 6.9e-24 114.8 161 40.4
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 9.0e-24 114.4 163 39.3
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 9.0e-24 114.4 163 39.3
Lalb_Chr05g0229301 Lupinus albus HOM05D002007 ORTHO05D005759 9.0e-24 114.4 163 36.8
Actinidia32796 Actinidia chinensis HOM05D002007 ORTHO05D005759 1.2e-23 114.0 170 41.2
Phvul.003G277900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 2.6e-23 112.8 170 38.2
Ciclev10003495m.g Citrus clementina HOM05D002007 ORTHO05D005759 3.4e-23 112.5 170 39.4
Actinidia01243 Actinidia chinensis HOM05D002007 ORTHO05D005759 4.4e-23 112.1 159 41.5
CDE02G4391 Ceratophyllum demersum HOM05D002007 ORTHO05D005759 4.4e-23 112.1 151 41.1
ClCG07G011150 Citrullus lanatus HOM05D002007 ORTHO05D005759 5.8e-23 111.7 170 38.2
Lalb_Chr05g0215211 Lupinus albus HOM05D002007 ORTHO05D005759 5.8e-23 111.7 170 38.8
Rhsim11G0038300 Rhododendron simsii HOM05D002007 ORTHO05D005759 5.8e-23 111.7 165 39.4
RhsimUnG0122600 Rhododendron simsii HOM05D002007 ORTHO05D005759 5.8e-23 111.7 165 39.4
Solyc08g075230.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 5.8e-23 111.7 167 38.9
Sopen08g023830 Solanum pennellii HOM05D002007 ORTHO05D005759 5.8e-23 111.7 167 38.9
Duzib205G1662 Durio zibethinus HOM05D002007 ORTHO05D005759 9.9e-23 110.9 164 36.6
Glyma.16G108200 Glycine max HOM05D002007 ORTHO05D005759 1.3e-22 110.5 167 37.1
Manes.07G043400 Manihot esculenta HOM05D002007 ORTHO05D005759 1.3e-22 110.5 164 38.4
PGSC0003DMG400001950 Solanum tuberosum HOM05D002007 ORTHO05D005759 1.3e-22 110.5 167 38.3
CAN.G514.11 Capsicum annuum HOM05D002007 ORTHO05D005759 2.2e-22 109.8 167 38.3
CiPaw.06G072700 Carya illinoinensis HOM05D002007 ORTHO05D005759 2.2e-22 109.8 156 41.7
Nitab4.5_0000236g0050 Nicotiana tabacum HOM05D002007 ORTHO05D005759 2.9e-22 109.4 167 38.9
CsaV3_4G007100 Cucumis sativus L. HOM05D002007 ORTHO05D005759 4.9e-22 108.6 170 36.5
Nitab4.5_0005896g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 4.9e-22 108.6 167 38.3
TWI32G1199 Tripterygium wilfordii HOM05D002007 ORTHO05D005759 6.4e-22 108.2 170 39.4
ATR0568G058 Amborella trichopoda HOM05D002007 ORTHO05D005759 8.4e-22 107.8 158 39.9
Oeu011637.1 Olea europaea HOM05D002007 ORTHO05D005759 8.4e-22 107.8 167 36.5
Oeu014069.1 Olea europaea HOM05D002007 ORTHO05D005759 8.4e-22 107.8 162 37.0
Oeu057154.1 Olea europaea HOM05D002007 ORTHO05D005759 8.4e-22 107.8 164 37.2
Sed0024497 Sechium edule HOM05D002007 ORTHO05D005759 8.4e-22 107.8 170 38.2
unitig_0.g2832 Utricularia gibba HOM05D002007 ORTHO05D005759 8.4e-22 107.8 151 37.7
Cc08_g06070 Coffea canephora HOM05D002007 ORTHO05D005759 1.1e-21 107.5 159 41.5
Migut.A00477 Erythranthe guttata HOM05D002007 ORTHO05D005759 1.4e-21 107.1 157 39.5
FvH4_5g24680 Fragaria vesca HOM05D002007 ORTHO05D005759 1.4e-21 107.1 156 37.8
Lj2g0009290 Lotus japonicus HOM05D002007 ORTHO05D005759 1.4e-21 107.1 158 39.9
RcHm_v2.0_Chr7g0215061 Rosa chinensis HOM05D002007 ORTHO05D005759 1.4e-21 107.1 162 38.3
vmacro00104 Vaccinium macrocarpon HOM05D002007 ORTHO05D005759 1.4e-21 107.1 164 39.6
Medtr5g025760 Medicago truncatula HOM05D002007 ORTHO05D005759 1.9e-21 106.7 165 35.8
Psat0s1099g0040 Pisum sativum HOM05D002007 ORTHO05D005759 1.9e-21 106.7 165 34.5
TPR.G7868 Trifolium pratense HOM05D002007 ORTHO05D005759 2.4e-21 106.3 165 36.4
Os06g0710500 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D005759 3.2e-21 105.9 158 41.1
Os08g0163600 Oryza sativa ssp. japonica HOM05D009720 ORTHO05D005759 3.2e-21 105.9 163 41.1
FAN04G2167 Fragaria x ananassa HOM05D002007 ORTHO05D005759 5.4e-21 105.1 162 37.7
Gohir.A05G288800 Gossypium hirsutum HOM05D002007 ORTHO05D005759 5.4e-21 105.1 167 36.5
Gorai.009G305100 Gossypium raimondii HOM05D002007 ORTHO05D005759 5.4e-21 105.1 167 36.5
FAN08G1950 Fragaria x ananassa HOM05D002007 ORTHO05D005759 9.3e-21 104.4 170 35.9
Lalb_Chr09g0325081 Lupinus albus HOM05D002007 ORTHO05D005759 9.3e-21 104.4 167 35.3
Peaxi162Scf01644g00002 Petunia axillaris HOM05D002007 ORTHO05D005759 9.3e-21 104.4 167 36.5
Sp2g10270 Schrenkiella parvula HOM05D002007 ORTHO05D005759 9.3e-21 104.4 158 38.6
TPR.G11463 Trifolium pratense HOM05D002007 ORTHO05D005759 9.3e-21 104.4 165 36.4
arahy.Tifrunner.gnm1.ann1.R12JL5 Arachis hypogaea HOM05D002007 ORTHO05D005759 2.1e-20 103.2 167 34.7
arahy.Tifrunner.gnm1.ann1.TCKY6I Arachis hypogaea HOM05D002007 ORTHO05D005759 2.1e-20 103.2 167 34.7
Dinv09412 Davidia involucrata HOM05D002007 ORTHO05D005759 2.1e-20 103.2 150 40.0
Manes.10G095600 Manihot esculenta HOM05D002007 ORTHO05D005759 2.1e-20 103.2 170 34.1
Medtr8g072140 Medicago truncatula HOM05D002007 ORTHO05D005759 2.1e-20 103.2 165 36.4
Gohir.A08G148400 Gossypium hirsutum HOM05D002007 ORTHO05D005759 4.6e-20 102.1 167 35.9
Psat4g108400 Pisum sativum HOM05D002007 ORTHO05D005759 4.6e-20 102.1 165 35.8
AT5G45320 Arabidopsis thaliana HOM05D002007 ORTHO05D005759 6.0e-20 101.7 158 39.2
DCAR_030946 Daucus carota HOM05D002007 ORTHO05D005759 7.8e-20 101.3 150 36.0
Gorai.004G176700 Gossypium raimondii HOM05D002007 ORTHO05D005759 7.8e-20 101.3 167 36.5
CAN.G947.27 Capsicum annuum HOM05D002007 ORTHO05D005759 1.0e-19 100.9 165 35.2
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 1.0e-19 100.9 159 34.6
PGSC0003DMG400029286 Solanum tuberosum HOM05D002007 ORTHO05D005759 1.0e-19 100.9 165 34.5
Zm00001eb227630 Zea mays HOM05D002007 ORTHO05D005759 1.0e-19 100.9 165 38.8
Lsat_1_v5_gn_6_16960 Lactuca sativa HOM05D002007 ORTHO05D005759 1.3e-19 100.5 131 44.3
Prupe.5G014700 Prunus persica HOM05D002007 ORTHO05D005759 1.3e-19 100.5 158 34.8
Atru.chr6.2147 Acer truncatum HOM05D002007 ORTHO05D005759 2.3e-19 99.8 163 35.6
AL8G13480 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 2.3e-19 99.8 165 36.4
Migut.E01381 Erythranthe guttata HOM05D002007 ORTHO05D005759 2.3e-19 99.8 149 38.9
MD06G1012000 Malus domestica HOM05D002007 ORTHO05D005759 2.3e-19 99.8 158 37.3
Sabra03G0020400 Salix brachista HOM05D002007 ORTHO05D005759 2.3e-19 99.8 173 35.3
Carub.0008s0281 Capsella rubella HOM05D002007 ORTHO05D005759 3.0e-19 99.4 158 39.2
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 3.0e-19 99.4 165 35.2
Thhalv10001032m.g Eutrema salsugineum HOM05D002007 ORTHO05D005759 3.9e-19 99.0 158 35.4
HanXRQChr08g0227001 Helianthus annuus HOM05D002007 ORTHO05D005759 3.9e-19 99.0 165 38.8
Sc07g0008110 Simmondsia chinensis HOM05D002007 ORTHO05D005759 3.9e-19 99.0 165 33.9
Solyc12g096180.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 3.9e-19 99.0 165 34.5
A02p29030 Brassica napus HOM05D002007 ORTHO05D005759 5.1e-19 98.6 158 37.3
Gohir.D08G169500 Gossypium hirsutum HOM05D002007 ORTHO05D005759 5.1e-19 98.6 167 35.9
BcaC03g16740 Brassica carinata HOM05D002007 ORTHO05D005759 6.6e-19 98.2 158 36.7
BcaC06g31560 Brassica carinata HOM05D002007 ORTHO05D005759 6.6e-19 98.2 162 34.6
C02p46130 Brassica napus HOM05D002007 ORTHO05D005759 6.6e-19 98.2 158 36.7
BolC2t10670H Brassica oleracea HOM05D002007 ORTHO05D005759 6.6e-19 98.2 158 36.7
BraA02t07935Z Brassica rapa HOM05D002007 ORTHO05D005759 6.6e-19 98.2 158 36.7
COL.COLO4_16737 Corchorus olitorius HOM05D002007 ORTHO05D005759 8.7e-19 97.8 159 36.5
HanXRQChr13g0412731 Helianthus annuus HOM05D002007 ORTHO05D005759 8.7e-19 97.8 160 38.1
THA.LOC104811158 Tarenaya hassleriana HOM05D002007 ORTHO05D005759 1.1e-18 97.4 156 39.1
CARHR176770 Cardamine hirsuta HOM05D002007 ORTHO05D005759 1.9e-18 96.7 158 36.7
Lsat_1_v5_gn_6_74040 Lactuca sativa HOM05D002007 ORTHO05D005759 1.9e-18 96.7 165 35.8
BcaC06g34446 Brassica carinata HOM05D002007 ORTHO05D005759 3.3e-18 95.9 162 35.8
C07p28350 Brassica napus HOM05D002007 ORTHO05D005759 3.3e-18 95.9 162 35.8
BolC7t43375H Brassica oleracea HOM05D002007 ORTHO05D005759 3.3e-18 95.9 162 35.8
Nitab4.5_0010692g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 3.3e-18 95.9 165 34.5
HPP92_027668 Vanilla planifolia HOM05D002007 ORTHO05D428762 4.3e-18 95.5 51 100.0
A06p46680 Brassica napus HOM05D002007 ORTHO05D005759 5.6e-18 95.1 162 35.2
BraA06t27540Z Brassica rapa HOM05D002007 ORTHO05D005759 5.6e-18 95.1 162 35.2
ECA233G2534 Erigeron canadensis HOM05D002007 ORTHO05D005759 7.3e-18 94.7 131 42.0
Aa31LG9G7700 Aethionema arabicum HOM05D002007 ORTHO05D005759 1.3e-17 94.0 158 36.1
BcaB07g30461 Brassica carinata HOM05D002007 ORTHO05D005759 1.3e-17 94.0 158 36.1
CsaV3_4G014820 Cucumis sativus L. HOM05D002007 ORTHO05D000355 1.3e-17 94.0 159 34.6
SHI32759 Sapria himalayana HOM05D002007 ORTHO05D005759 1.3e-17 94.0 158 34.2
Nitab4.5_0000943g0020 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.6e-17 93.6 165 34.5
Oeu023064.1 Olea europaea HOM05D002007 ORTHO05D005759 1.6e-17 93.6 157 35.0
ClCG11G016180 Citrullus lanatus HOM05D002007 ORTHO05D005759 4.8e-17 92.0 159 34.0
Duzib068G0709 Durio zibethinus HOM05D002007 ORTHO05D005759 4.8e-17 92.0 159 34.0
Eucgr.E01156 Eucalyptus grandis HOM05D002007 ORTHO05D005759 4.8e-17 92.0 159 34.6
Sed0013162 Sechium edule HOM05D002007 ORTHO05D005759 5.3e-16 88.6 159 32.1
AL8G13540 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 1.2e-15 87.4 150 36.0
HanXRQChr03g0082821 Helianthus annuus HOM05D002007 ORTHO05D005759 1.2e-15 87.4 160 34.4
Ca_22461_v3 Cicer arietinum L. HOM05D002007 ORTHO05D005759 1.5e-15 87.0 138 36.2
QL12p003363 Quercus lobata HOM05D002007 ORTHO05D005759 1.5e-15 87.0 127 39.4
DCAR_000713 Daucus carota HOM05D002007 ORTHO05D005759 2.0e-15 86.7 147 35.4
Sabra01G0179300 Salix brachista HOM05D002007 ORTHO05D005759 2.6e-15 86.3 170 30.6
QL12p003360 Quercus lobata HOM05D002007 ORTHO05D005759 3.4e-15 85.9 120 40.0
Gohir.D12G203700 Gossypium hirsutum HOM05D002007 ORTHO05D005759 4.5e-15 85.5 163 32.5
Gorai.008G218500 Gossypium raimondii HOM05D002007 ORTHO05D005759 4.5e-15 85.5 163 32.5
SalBow4G0822 Salvia bowleyana HOM05D002007 ORTHO05D000355 5.8e-15 85.1 153 32.7
EL10Ac5g11944 Beta vulgaris HOM05D002007 ORTHO05D005759 7.6e-15 84.7 135 34.8
Potri.003G046000 Populus trichocarpa HOM05D002007 ORTHO05D005759 7.6e-15 84.7 146 35.6
Potri.004G234500 Populus trichocarpa HOM05D002007 ORTHO05D005759 7.6e-15 84.7 159 32.7
Gohir.A12G200900 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.3e-14 84.0 163 33.1
Zm00001eb153250 Zea mays HOM05D009720 ORTHO05D012012 2.2e-14 83.2 155 36.8
Gohir.D05G290066 Gossypium hirsutum HOM05D002007 ORTHO05D005759 3.8e-14 82.4 109 40.4
Zm00001eb319490 Zea mays HOM05D009720 ORTHO05D012012 6.4e-14 81.6 137 40.1
Zm00001eb415280 Zea mays HOM05D009720 ORTHO05D012012 1.1e-13 80.9 155 38.1
FAN13G3232 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.9e-13 80.1 126 34.9
FAN13G3190 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.4e-13 79.7 126 34.9
FAN18G3178 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.4e-13 79.7 126 34.9
Zm00001eb373170 Zea mays HOM05D009720 ORTHO05D012012 2.4e-13 79.7 137 39.4
Sabra03G0020600 Salix brachista HOM05D002007 ORTHO05D005759 7.1e-13 78.2 158 34.2
Zm00001eb198890 Zea mays HOM05D009720 ORTHO05D012012 1.2e-12 77.4 134 39.6
MD16G1286800 Malus domestica HOM05D002007 ORTHO05D005759 2.7e-12 76.3 125 34.4
Peaxi162Scf00876g00032 Petunia axillaris HOM05D002007 ORTHO05D005759 2.7e-12 76.3 145 31.7
Zm00001eb343480 Zea mays HOM05D009720 ORTHO05D012012 3.5e-12 75.9 136 36.0
Zm00001eb351470 Zea mays HOM05D009720 ORTHO05D012012 7.9e-12 74.7 134 38.8
Zm00001eb076370 Zea mays HOM05D003600 ORTHO05D004129 1.0e-11 74.3 143 37.1
Zm00001eb371360 Zea mays HOM05D009720 ORTHO05D012012 3.0e-11 72.8 118 40.7
ECA240G4318 Erigeron canadensis HOM05D002007 ORTHO05D000355 6.7e-11 71.6 130 34.6
Zm00001eb055160 Zea mays HOM05D009720 ORTHO05D012012 8.7e-11 71.2 118 39.8
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 3.3e-10 69.3 74 44.6
Zm00001eb278080 Zea mays HOM05D009720 ORTHO05D012012 3.3e-10 69.3 155 34.2
Zm00001eb260860 Zea mays HOM05D009720 ORTHO05D012012 1.3e-09 67.4 117 35.0
Zm00001eb149200 Zea mays HOM05D009720 ORTHO05D012012 1.4e-08 63.9 154 29.9
Zm00001eb081960 Zea mays HOM05D009720 ORTHO05D012012 5.3e-08 62.0 113 39.8
HanXRQChr05g0160241 Helianthus annuus HOM05D002540 ORTHO05D002672 1.2e-07 60.8 89 37.1
Lalb_Chr15g0076561 Lupinus albus HOM05D000733 ORTHO05D000644 3.4e-07 59.3 154 27.9
DCAR_007041 Daucus carota HOM05D002540 ORTHO05D002672 7.6e-07 58.2 159 25.2
Lsat_1_v5_gn_5_301 Lactuca sativa HOM05D002540 ORTHO05D002672 9.9e-07 57.8 125 27.2
Zm00001eb081970 Zea mays HOM05D009720 ORTHO05D012012 1.3e-06 57.4 113 38.1
FAN22G0800 Fragaria x ananassa HOM05D002540 ORTHO05D002672 1.7e-06 57.0 173 26.0
Hma1.2p1_0815F.1_g222730 Hydrangea macrophylla HOM05D002540 ORTHO05D002672 1.7e-06 57.0 171 24.6
Nn4g22560 Nelumbo nucifera HOM05D002540 ORTHO05D002672 2.2e-06 56.6 159 26.4
Lsat_1_v5_gn_9_89201 Lactuca sativa HOM05D002540 ORTHO05D002672 3.8e-06 55.8 139 30.9
Glyma.16G017900 Glycine max HOM05D000733 ORTHO05D000644 4.9e-06 55.5 150 28.7
MSTRG.7020 Avicennia marina HOM05D002540 ORTHO05D002672 6.4e-06 55.1 86 32.6
MD11G1039100 Malus domestica HOM05D002540 ORTHO05D002672 6.4e-06 55.1 88 31.8
EL10Ac2g04746 Beta vulgaris HOM05D002540 ORTHO05D002672 8.4e-06 54.7 98 32.7
Cfa009238 Carpinus fangiana HOM05D002540 ORTHO05D002672 8.4e-06 54.7 170 26.5
Cc11_g15650 Coffea canephora HOM05D002540 ORTHO05D002672 8.4e-06 54.7 164 28.7
Sp7g24450 Schrenkiella parvula HOM05D002540 ORTHO05D002672 8.4e-06 54.7 83 31.3


User provided reference genes

Program Settings