Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.1e-190 668.3 336 100.0
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 3.1e-102 375.9 271 67.2
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 2.7e-101 372.9 270 68.1
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.3e-100 370.5 273 65.6
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.3e-100 369.8 323 60.1
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.9e-99 366.7 307 61.9
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.5e-99 366.3 316 59.2
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 9.5e-99 364.4 300 62.3
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.2e-98 364.0 266 68.8
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.2e-98 364.0 266 68.8
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 2.1e-98 363.2 261 66.3
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 2.1e-98 363.2 323 60.1
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 6.1e-98 361.7 316 58.9
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 8.0e-98 361.3 260 66.2
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.0e-97 360.9 264 65.9
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.8e-97 360.1 263 65.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 4.0e-97 359.0 280 63.2
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 4.0e-97 359.0 294 62.6
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 5.2e-97 358.6 261 67.0
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 6.8e-97 358.2 280 62.9
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 8.9e-97 357.8 269 63.6
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 2.0e-96 356.7 262 67.2
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 2.6e-96 356.3 276 65.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.6e-96 356.3 312 58.0
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.4e-96 355.9 266 66.9
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 7.5e-96 354.8 296 61.8
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 7.5e-96 354.8 267 66.3
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 7.5e-96 354.8 260 66.9
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 9.8e-96 354.4 304 58.6
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.3e-95 354.0 298 61.1
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.3e-95 354.0 264 66.3
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.7e-95 353.6 264 64.8
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.7e-95 353.6 268 66.0
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 3.7e-95 352.4 304 58.6
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 3.7e-95 352.4 260 65.4
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 4.9e-95 352.1 260 66.2
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 6.4e-95 351.7 263 66.9
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 2.4e-94 349.7 262 66.0
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 5.4e-94 348.6 261 65.1
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 7.0e-94 348.2 264 65.5
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 9.2e-94 347.8 288 61.1
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.2e-93 347.4 262 63.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.2e-93 347.4 260 64.2
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.7e-93 346.3 257 67.3
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.7e-93 346.3 285 60.7
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.5e-93 345.9 285 60.4
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 3.5e-93 345.9 266 63.2
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 4.6e-93 345.5 307 57.0
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 6.0e-93 345.1 256 67.6
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.0e-92 344.4 263 65.8
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.7e-92 343.6 317 55.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 5.0e-92 342.0 262 65.6
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 5.0e-92 342.0 266 63.5
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.0e-92 342.0 262 64.5
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.6e-92 341.7 263 65.0
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 8.6e-92 341.3 305 56.1
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 8.6e-92 341.3 264 62.5
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.1e-91 340.9 284 59.5
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.5e-91 340.5 285 59.3
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.3e-91 339.0 264 63.3
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 5.6e-91 338.6 268 62.3
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 7.3e-91 338.2 212 75.0
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 7.3e-91 338.2 288 60.4
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 9.5e-91 337.8 310 56.5
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.2e-90 337.4 235 66.8
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 2.1e-90 336.7 264 63.6
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 4.7e-90 335.5 264 63.6
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 6.2e-90 335.1 263 62.0
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 6.2e-90 335.1 336 53.9
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 6.2e-90 335.1 276 60.1
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.1e-89 334.3 268 62.3
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.1e-89 334.3 264 62.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 1.1e-89 334.3 285 59.3
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.1e-89 334.3 239 70.3
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.8e-89 333.6 268 59.7
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 3.1e-89 332.8 272 61.0
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 3.1e-89 332.8 312 55.4
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.0e-89 332.4 262 61.8
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 5.2e-89 332.0 327 52.9
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 5.2e-89 332.0 327 52.9
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 5.2e-89 332.0 264 63.3
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 6.8e-89 331.6 274 58.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 8.9e-89 331.3 326 52.8
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.2e-88 330.9 293 56.7
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.2e-88 330.9 268 62.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 2.0e-88 330.1 264 62.5
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.6e-88 329.7 264 61.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 9.8e-88 327.8 280 60.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.3e-87 327.4 269 59.5
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.9e-87 326.2 264 61.7
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 2.9e-87 326.2 252 61.9
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 8.3e-87 324.7 236 62.7
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 2.4e-86 323.2 261 62.1
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 5.4e-86 322.0 274 60.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.6e-85 320.5 254 61.0
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 6.0e-85 318.5 233 67.8
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.3e-84 316.6 313 53.4
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 5.1e-84 315.5 354 48.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 8.6e-84 314.7 332 50.6
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.5e-83 313.9 236 63.6
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 2.8e-82 309.7 214 69.6
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 4.4e-80 302.4 279 54.8
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 3.2e-78 296.2 281 54.4
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 5.4e-78 295.4 183 77.0
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.3e-76 290.0 260 54.2
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 6.6e-76 288.5 322 49.1
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.9e-75 287.0 260 53.8
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.5e-75 286.6 260 54.2
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.6e-74 283.9 190 70.5
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.8e-73 280.4 223 63.2
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 9.9e-72 274.6 245 54.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 9.2e-70 268.1 258 58.1
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 6.2e-66 255.4 210 57.6
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 4.2e-62 242.7 298 45.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.0e-60 236.5 233 50.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 3.4e-48 196.4 215 46.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 4.2e-46 189.5 121 71.9
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.5e-43 180.3 123 69.1
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 8.4e-39 165.2 161 51.6
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 4.2e-38 162.9 141 56.0
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.9e-37 158.7 224 42.0
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-23 114.8 83 67.5
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 4.2e-22 109.8 78 78.2
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 5.1e-20 102.8 68 69.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 2.2e-18 97.4 68 67.6
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 6.3e-18 95.9 152 34.9
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.6e-16 90.5 61 72.1
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.6e-16 90.5 61 72.1
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.2e-15 87.4 153 35.9
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 7.2e-14 82.4 64 62.5
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 5.7e-11 72.8 116 35.3
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 5.7e-11 72.8 116 35.3
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 9.7e-11 72.0 123 35.0
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 9.7e-11 72.0 116 37.1
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 9.7e-11 72.0 116 37.1
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 9.7e-11 72.0 119 34.5
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.3e-10 71.6 145 32.4
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.7e-10 71.2 250 29.6
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.2e-10 70.9 116 34.5
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.2e-10 70.9 119 34.5
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 2.2e-10 70.9 126 32.5
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.8e-10 70.5 119 35.3
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.8e-10 70.5 140 29.3
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 3.7e-10 70.1 116 37.1
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 4.8e-10 69.7 116 35.3
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.8e-10 69.7 129 31.0
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 4.8e-10 69.7 146 31.5
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 6.3e-10 69.3 119 32.8
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 6.3e-10 69.3 256 27.0
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 8.2e-10 68.9 143 32.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.1e-09 68.6 116 34.5
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.1e-09 68.6 142 30.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.1e-09 68.6 116 33.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.1e-09 68.6 116 33.6
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.4e-09 68.2 214 29.0
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.4e-09 68.2 169 30.8
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.4e-09 68.2 145 31.0
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.4e-09 68.2 130 32.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.4e-09 68.2 119 32.8
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.8e-09 67.8 191 27.7
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.8e-09 67.8 194 29.9
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.4e-09 67.4 215 30.7
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 3.1e-09 67.0 254 26.0
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.1e-09 67.0 242 28.1
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 4.1e-09 66.6 252 28.2
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 4.1e-09 66.6 115 30.4
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.2e-08 65.1 116 33.6
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.6e-08 64.7 207 30.9
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.6e-08 64.7 120 33.3
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 7.7e-08 62.4 232 27.6
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.7e-07 61.2 150 28.0
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 2.2e-07 60.8 90 40.0
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 8.5e-07 58.9 138 31.2
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 8.5e-07 58.9 107 31.8
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 4.2e-06 56.6 253 25.3
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 5.5e-06 56.2 111 33.3


User provided reference genes

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