Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007228 Vanilla planifolia HOM05D002368 ORTHO05D002425 5.5e-59 230.7 112 100.0
TAR362G0660 Trochodendron aralioides HOM05D002368 ORTHO05D002425 3.8e-12 75.1 61 63.9
MBI11_g04276_MAGBIO Magnolia biondii HOM05D002368 ORTHO05D002425 1.1e-11 73.6 69 56.5
Zm00001eb432800 Zea mays HOM05D002368 ORTHO05D002425 1.1e-11 73.6 60 58.3
Nn1g07851 Nelumbo nucifera HOM05D002368 ORTHO05D002425 3.2e-11 72.0 83 50.6
PSO764G0348 Papaver somniferum HOM05D002368 ORTHO05D002425 4.2e-11 71.6 63 57.1
Aqoxy5G00075 Aquilegia oxysepala HOM05D002368 ORTHO05D002425 5.5e-11 71.2 63 58.7
Actinidia37591 Actinidia chinensis HOM05D002368 ORTHO05D002425 2.1e-10 69.3 77 50.6
PSO170G2832 Papaver somniferum HOM05D002368 ORTHO05D002425 4.7e-10 68.2 63 55.6
TWI36G0876 Tripterygium wilfordii HOM05D002368 ORTHO05D002425 4.7e-10 68.2 85 42.4
CiPaw.03G149400 Carya illinoinensis HOM05D002368 ORTHO05D002425 6.1e-10 67.8 61 57.4
Eucgr.K02168 Eucalyptus grandis HOM05D002368 ORTHO05D002425 6.1e-10 67.8 69 58.0
Atru.chr5.2112 Acer truncatum HOM05D002368 ORTHO05D002425 1.0e-09 67.0 70 52.9
Ca_20081_v3 Cicer arietinum L. HOM05D002368 ORTHO05D002425 1.0e-09 67.0 61 54.1
Medtr4g020080 Medicago truncatula HOM05D002368 ORTHO05D002425 1.0e-09 67.0 72 48.6
Lsat_1_v5_gn_5_179481 Lactuca sativa HOM05D002368 ORTHO05D002425 1.8e-09 66.2 67 53.7
MD05G1175500 Malus domestica HOM05D002368 ORTHO05D002425 1.8e-09 66.2 60 55.0
Lj3g0026716 Lotus japonicus HOM05D002368 ORTHO05D002425 2.3e-09 65.9 72 44.4
Manes.13G045600 Manihot esculenta HOM05D002368 ORTHO05D002425 2.3e-09 65.9 71 49.3
Lj2C1131G8 Lonicera japonica HOM05D002368 ORTHO05D002425 4.0e-09 65.1 60 56.7
TWI18G0623 Tripterygium wilfordii HOM05D002368 ORTHO05D002425 4.0e-09 65.1 71 49.3
Gohir.A11G137600 Gossypium hirsutum HOM05D002368 ORTHO05D002425 5.2e-09 64.7 70 44.3
Gohir.D11G144000 Gossypium hirsutum HOM05D002368 ORTHO05D002425 5.2e-09 64.7 70 44.3
Psat7g240240 Pisum sativum HOM05D002368 ORTHO05D002425 5.2e-09 64.7 71 50.7
ATR0691G157 Amborella trichopoda HOM05D002368 ORTHO05D002425 6.8e-09 64.3 42 66.7
Ciclev10022517m.g Citrus clementina HOM05D002368 ORTHO05D002425 6.8e-09 64.3 70 50.0
Dinv19205 Davidia involucrata HOM05D002368 ORTHO05D002425 6.8e-09 64.3 68 47.1
RcHm_v2.0_Chr6g0284891 Rosa chinensis HOM05D002368 ORTHO05D002425 6.8e-09 64.3 75 48.0
Dinv04650 Davidia involucrata HOM05D002368 ORTHO05D002425 8.8e-09 63.9 60 55.0
Potri.002G242200 Populus trichocarpa HOM05D002368 ORTHO05D002425 8.8e-09 63.9 63 52.4
Sopen09g024000 Solanum pennellii HOM05D002368 ORTHO05D002425 8.8e-09 63.9 60 53.3
vmacro02756 Vaccinium macrocarpon HOM05D002368 ORTHO05D002425 8.8e-09 63.9 60 55.0
CARHR101170 Cardamine hirsuta HOM05D002368 ORTHO05D002425 1.2e-08 63.5 72 51.4
DCAR_012641 Daucus carota HOM05D003310 ORTHO05D002425 1.2e-08 63.5 61 54.1
Gorai.007G154200 Gossypium raimondii HOM05D002368 ORTHO05D002425 1.2e-08 63.5 70 44.3
Sc17g0002330 Simmondsia chinensis HOM05D002368 ORTHO05D002425 1.2e-08 63.5 70 52.9
TPR.G17883 Trifolium pratense HOM05D002368 ORTHO05D002425 1.2e-08 63.5 61 50.8
Migut.D00536 Erythranthe guttata HOM05D002368 ORTHO05D002425 1.5e-08 63.2 64 53.1
ATR0824G131 Amborella trichopoda HOM05D002368 ORTHO05D002425 2.0e-08 62.8 58 51.7
arahy.Tifrunner.gnm1.ann1.T08VJF Arachis hypogaea HOM05D002368 ORTHO05D002425 2.6e-08 62.4 60 53.3
arahy.Tifrunner.gnm1.ann1.VT94RC Arachis hypogaea HOM05D002368 ORTHO05D002425 2.6e-08 62.4 60 53.3
ECA248G2271 Erigeron canadensis HOM05D002368 ORTHO05D002425 2.6e-08 62.4 60 51.7
Thhalv10002684m.g Eutrema salsugineum HOM05D002368 ORTHO05D002425 2.6e-08 62.4 71 50.7
AUR62008910 Chenopodium quinoa HOM05D002368 ORTHO05D002425 3.4e-08 62.0 68 51.5
FAN27G2737 Fragaria x ananassa HOM05D002368 ORTHO05D001690 4.4e-08 61.6 60 53.3
MD10G1164600 Malus domestica HOM05D002368 ORTHO05D002425 4.4e-08 61.6 60 51.7
Nitab4.5_0000045g0160 Nicotiana tabacum HOM05D002368 ORTHO05D002425 4.4e-08 61.6 60 53.3
Peaxi162Scf00107g01915 Petunia axillaris HOM05D002368 ORTHO05D002425 4.4e-08 61.6 60 55.0
SGA_v2.0_scaffold42G16135 Striga asiatica HOM05D000966 ORTHO05D002384 4.4e-08 61.6 58 56.9
FvH4_2g19070 Fragaria vesca HOM05D002368 ORTHO05D002425 7.5e-08 60.8 72 47.2
HanXRQChr01g0015121 Helianthus annuus HOM05D002368 ORTHO05D002425 7.5e-08 60.8 88 38.6
MSTRG.12492 Avicennia marina HOM05D002368 ORTHO05D002425 9.8e-08 60.5 66 48.5
Carub.0003s2523 Capsella rubella HOM05D002368 ORTHO05D002425 9.8e-08 60.5 71 52.1
unitig_899.g15239 Utricularia gibba HOM05D002368 ORTHO05D002425 9.8e-08 60.5 79 46.8
Zm00001eb253320 Zea mays HOM05D002368 ORTHO05D002425 9.8e-08 60.5 75 37.3
FAN15G2543 Fragaria x ananassa HOM05D002368 ORTHO05D001690 1.3e-07 60.1 60 51.7
Aa31LG9G4720 Aethionema arabicum HOM05D002368 ORTHO05D002425 1.7e-07 59.7 71 47.9
Duzib138G1378 Durio zibethinus HOM05D002368 ORTHO05D002425 1.7e-07 59.7 70 41.4
Sp3g22560 Schrenkiella parvula HOM05D002368 ORTHO05D002425 1.7e-07 59.7 69 49.3
SpUn0027_0040 Schrenkiella parvula HOM05D002368 ORTHO05D002425 1.7e-07 59.7 69 49.3
Ah.08g214260 Amaranthus hybridus HOM05D002368 ORTHO05D002425 2.2e-07 59.3 65 47.7
Phvul.010G010800 Phaseolus vulgaris HOM05D002368 ORTHO05D002425 2.2e-07 59.3 61 49.2
Rhsim09G0121900 Rhododendron simsii HOM05D002368 ORTHO05D002425 2.2e-07 59.3 52 51.9
Hma1.2p1_0226F.1_g095720 Hydrangea macrophylla HOM05D002368 ORTHO05D002425 2.8e-07 58.9 37 67.6
PGR044G2512 Punica granatum HOM05D002368 ORTHO05D002425 2.8e-07 58.9 61 52.5
AL3G40590 Arabidopsis lyrata HOM05D002368 ORTHO05D002425 3.7e-07 58.5 71 50.7
AT3G24820 Arabidopsis thaliana HOM05D002368 ORTHO05D002425 3.7e-07 58.5 71 50.7
arahy.Tifrunner.gnm1.ann1.KR6SVQ Arachis hypogaea HOM05D002368 ORTHO05D002425 3.7e-07 58.5 59 44.1
arahy.Tifrunner.gnm1.ann1.S5WF1L Arachis hypogaea HOM05D002368 ORTHO05D002425 3.7e-07 58.5 59 44.1
Lalb_Chr12g0209681 Lupinus albus HOM05D002368 ORTHO05D002425 4.8e-07 58.2 65 47.7
SEGI_11777 Sequoiadendron giganteum HOM05D002368 ORTHO05D002425 6.3e-07 57.8 67 46.3
TPR.G2039 Trifolium pratense HOM05D002368 ORTHO05D002425 8.3e-07 57.4 59 44.1
Dinv17463 Davidia involucrata HOM05D002368 ORTHO05D002425 1.1e-06 57.0 37 64.9
SalBow2G1685 Salvia bowleyana HOM05D002368 ORTHO05D002425 1.1e-06 57.0 67 44.8
BcaB06g26699 Brassica carinata HOM05D002368 ORTHO05D002425 1.4e-06 56.6 67 43.3
Cpa.g.sc3.227 Carica papaya HOM05D002368 ORTHO05D002425 1.4e-06 56.6 71 40.8
Lj5A137G54 Lonicera japonica HOM05D002368 ORTHO05D002425 1.4e-06 56.6 35 68.6
CSS0027328 Camellia sinensis var. sinensis HOM05D002368 ORTHO05D002425 1.8e-06 56.2 37 62.2
COL.COLO4_27799 Corchorus olitorius HOM05D001549 ORTHO05D003098 1.8e-06 56.2 60 45.0
DCAR_010176 Daucus carota HOM05D002368 ORTHO05D002425 1.8e-06 56.2 49 55.1
Duzib248G0233 Durio zibethinus HOM05D002368 ORTHO05D002425 1.8e-06 56.2 62 41.9
CDE05G3114 Ceratophyllum demersum HOM05D002368 ORTHO05D002425 2.4e-06 55.8 50 54.0
ECA233G0016 Erigeron canadensis HOM05D002368 ORTHO05D002425 2.4e-06 55.8 63 47.6
Os02g0726400 Oryza sativa ssp. japonica HOM05D002368 ORTHO05D002425 2.4e-06 55.8 49 46.9
vmacro10472 Vaccinium macrocarpon HOM05D002368 ORTHO05D002425 2.4e-06 55.8 52 50.0
HanXRQChr03g0066641 Helianthus annuus HOM05D002368 ORTHO05D002425 3.1e-06 55.5 49 51.0
Thecc.01G226200 Theobroma cacao HOM05D002368 ORTHO05D002425 3.1e-06 55.5 70 40.0
Glyma.18G153000 Glycine max HOM05D002368 ORTHO05D002425 4.1e-06 55.1 60 46.7
Manes.14G089400 Manihot esculenta HOM05D002368 ORTHO05D002425 4.1e-06 55.1 34 67.6
Mapoly0015s0016 Marchantia polymorpha HOM05D002368 ORTHO05D002425 4.1e-06 55.1 35 65.7
Nn4g23546 Nelumbo nucifera HOM05D002368 ORTHO05D002425 4.1e-06 55.1 49 49.0
Aqoxy3G03754 Aquilegia oxysepala HOM05D002368 ORTHO05D002425 5.4e-06 54.7 37 62.2
EL10Ac5g11193 Beta vulgaris HOM05D002368 ORTHO05D002425 5.4e-06 54.7 65 43.1
AUR62032140 Chenopodium quinoa HOM05D002368 ORTHO05D002425 5.4e-06 54.7 70 41.4
Ca_21753_v3 Cicer arietinum L. HOM05D002368 ORTHO05D002425 5.4e-06 54.7 59 40.7
Hma1.2p1_0060F.1_g032700 Hydrangea macrophylla HOM05D002368 ORTHO05D002425 5.4e-06 54.7 37 62.2
AL1G39450 Arabidopsis lyrata HOM05D002368 ORTHO05D002425 7.0e-06 54.3 65 44.6
CANSAT64G1161 Cannabis sativa HOM05D002368 ORTHO05D002425 7.0e-06 54.3 48 50.0
CANSAT80G1161 Cannabis sativa HOM05D002368 ORTHO05D002425 7.0e-06 54.3 59 47.5
Cc01_g17040 Coffea canephora HOM05D002368 ORTHO05D002425 7.0e-06 54.3 81 43.2
FAN17G2469 Fragaria x ananassa HOM05D001549 ORTHO05D003098 7.0e-06 54.3 37 62.2
Medtr4g110020 Medicago truncatula HOM05D002368 ORTHO05D002425 7.0e-06 54.3 59 44.1
Nn3g17546 Nelumbo nucifera HOM05D002368 ORTHO05D002425 7.0e-06 54.3 37 56.8
Sed0005180 Sechium edule HOM05D002368 ORTHO05D002425 7.0e-06 54.3 60 43.3
Solyc12g038630.2 Solanum lycopersicum HOM05D002368 ORTHO05D002425 7.0e-06 54.3 53 45.3
Sopen12g018900 Solanum pennellii HOM05D002368 ORTHO05D002425 7.0e-06 54.3 53 45.3
MSTRG.22949 Avicennia marina HOM05D002368 ORTHO05D002425 9.1e-06 53.9 46 54.3
BcaC06g35761 Brassica carinata HOM05D002368 ORTHO05D002425 9.1e-06 53.9 60 50.0
C07p11170 Brassica napus HOM05D002368 ORTHO05D002425 9.1e-06 53.9 60 50.0
BolC7t41589H Brassica oleracea HOM05D002368 ORTHO05D002425 9.1e-06 53.9 60 50.0
Duzib133G0390 Durio zibethinus HOM05D002368 ORTHO05D002425 9.1e-06 53.9 70 40.0
PGR119G2372 Punica granatum HOM05D002368 ORTHO05D002425 9.1e-06 53.9 37 62.2
vmacro17661 Vaccinium macrocarpon HOM05D002368 ORTHO05D002425 9.1e-06 53.9 46 54.3
GSVIVG01008159001 Vitis vinifera HOM05D002368 ORTHO05D002425 9.1e-06 53.9 64 42.2


User provided reference genes

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