Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 5.8e-247 857.1 419 100.0
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 3.1e-147 525.8 393 65.4
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 4.0e-147 525.4 414 62.8
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 6.8e-147 524.6 406 65.0
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 2.0e-146 523.1 406 65.3
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 9.9e-146 520.8 392 64.8
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 3.8e-145 518.8 395 64.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 6.4e-145 518.1 420 61.4
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 6.4e-145 518.1 413 62.5
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-144 517.3 394 64.2
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-144 517.3 414 62.1
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.1e-144 517.3 412 63.3
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.9e-144 516.5 416 63.0
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.9e-144 516.5 394 64.2
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.2e-144 515.8 420 61.4
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.1e-144 515.4 417 62.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 5.4e-144 515.0 408 63.2
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 7.1e-144 514.6 408 63.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 9.2e-144 514.2 392 63.8
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 9.2e-144 514.2 413 61.7
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.6e-143 513.5 407 63.9
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.1e-143 513.1 417 61.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.6e-143 511.9 417 60.9
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 1.3e-142 510.4 401 63.1
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.7e-142 510.0 417 61.9
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.7e-142 510.0 413 61.3
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.3e-142 509.6 394 63.7
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.0e-142 509.2 394 63.5
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.9e-142 508.8 374 65.2
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.9e-142 508.8 417 60.4
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 5.1e-142 508.4 416 60.6
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 6.6e-142 508.1 421 61.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 8.6e-142 507.7 407 62.2
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.5e-141 506.9 414 61.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.5e-141 506.9 400 64.2
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.9e-141 506.5 408 62.7
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 2.5e-141 506.1 418 61.2
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.3e-141 505.8 419 61.1
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.3e-141 505.8 419 60.4
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.3e-141 505.8 411 62.3
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 4.3e-141 505.4 427 60.7
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 7.3e-141 504.6 416 62.5
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 9.6e-141 504.2 409 62.1
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 9.6e-141 504.2 430 61.4
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.2e-140 503.8 426 61.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.6e-140 503.4 392 63.5
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.8e-140 502.7 423 60.0
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-140 502.7 388 63.1
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 3.6e-140 502.3 423 60.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.6e-140 502.3 422 61.4
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 8.1e-140 501.1 418 60.3
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.1e-139 500.7 415 60.5
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.8e-139 500.0 393 62.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 3.1e-139 499.2 418 61.0
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 3.1e-139 499.2 392 63.0
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 9.0e-139 497.7 387 63.6
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.5e-138 496.9 418 59.1
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.0e-138 496.5 401 62.3
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.0e-138 496.5 418 60.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.4e-138 495.4 390 63.6
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 4.4e-138 495.4 390 62.8
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 5.8e-138 495.0 391 62.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 5.8e-138 495.0 407 59.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.3e-137 493.8 411 58.9
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.3e-137 493.8 411 58.9
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-137 493.4 411 58.9
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 2.2e-137 493.0 411 58.4
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 3.8e-137 492.3 411 58.4
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.8e-137 492.3 414 60.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 6.4e-137 491.5 411 60.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 8.4e-137 491.1 387 64.3
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.1e-136 490.7 424 59.7
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.9e-136 490.0 409 62.3
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 5.4e-136 488.4 383 64.2
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 9.3e-136 487.6 418 58.9
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 3.5e-135 485.7 409 58.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 4.6e-135 485.3 411 58.4
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 7.8e-135 484.6 416 60.6
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 7.8e-135 484.6 425 59.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.3e-134 483.8 409 58.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.3e-134 483.0 407 58.2
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 3.0e-134 482.6 409 57.9
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 3.0e-134 482.6 383 64.5
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 5.1e-134 481.9 409 58.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 6.6e-134 481.5 409 60.1
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 8.7e-134 481.1 391 63.7
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 7.3e-133 478.0 423 57.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-132 476.1 420 57.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 8.1e-132 474.6 380 59.5
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 8.1e-132 474.6 390 61.5
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 3.1e-131 472.6 378 63.0
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.2e-130 470.7 408 57.1
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 3.4e-130 469.2 441 56.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.5e-130 468.8 463 54.0
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 9.9e-130 467.6 399 58.1
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 9.9e-130 467.6 384 61.5
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.7e-129 466.8 376 62.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.1e-128 464.2 404 57.4
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 6.7e-126 454.9 374 60.7
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 7.4e-125 451.4 355 62.3
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.6e-124 450.3 415 57.3
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.8e-124 449.5 414 56.8
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.4e-122 442.6 338 63.9
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 7.1e-120 434.9 334 63.8
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.3e-117 425.6 386 58.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.6e-116 423.7 297 68.4
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 2.0e-114 416.8 377 55.7
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.6e-114 416.4 322 62.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 8.4e-113 411.4 338 58.9
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.1e-112 408.3 338 58.3
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.9e-110 402.5 338 58.0
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.9e-109 400.2 430 51.2
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 6.9e-107 391.7 282 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 5.0e-97 359.0 357 51.5
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.0e-97 359.0 269 64.3
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.9e-96 357.1 260 67.7
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 5.5e-96 355.5 312 54.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 5.3e-91 339.0 326 50.0
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.3e-91 339.0 275 62.2
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.5e-88 330.1 222 70.3
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.8e-86 323.9 276 58.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.1e-72 278.1 317 45.7
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.8e-67 260.8 240 52.5
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-62 244.6 229 55.0
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 3.0e-62 243.4 195 60.5
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 2.0e-58 230.7 192 58.3
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 4.0e-54 216.5 221 53.4
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.3e-49 200.7 166 57.2
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.2e-44 184.1 145 64.8
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-40 171.8 110 70.9
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 2.8e-39 167.2 110 64.5
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 3.2e-35 153.7 165 50.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 9.2e-35 152.1 127 52.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 5.4e-27 126.3 152 48.7
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 7.8e-26 122.5 75 76.0
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.5e-24 118.2 383 25.8
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.2e-21 108.6 240 32.9
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.4e-20 102.8 155 45.8
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 9.3e-19 99.0 63 69.8
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 8.7e-17 92.4 121 41.3
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 5.3e-14 83.2 51 68.6
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.5e-13 81.6 58 65.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.2e-10 72.0 61 54.1
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.8e-06 58.2 79 43.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.8e-06 58.2 79 43.0
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.1e-06 57.4 55 50.9


User provided reference genes

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