Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.3e-274 949.1 485 100.0
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.5e-140 503.1 480 56.0
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 3.3e-137 492.7 485 55.7
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 1.7e-133 480.3 393 62.6
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 5.0e-133 478.8 468 55.3
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 5.0e-133 478.8 452 56.4
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 7.2e-132 474.9 465 54.8
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 9.4e-132 474.6 452 55.8
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.6e-131 473.8 469 54.2
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 3.6e-131 472.6 406 60.1
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 8.8e-130 468.0 477 52.6
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.7e-128 463.8 455 54.3
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 2.2e-128 463.4 459 53.6
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.0e-125 452.2 477 51.4
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 8.5e-125 451.4 460 52.4
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.5e-124 450.7 460 52.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.9e-124 450.3 477 51.2
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 5.5e-124 448.7 460 52.0
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 7.2e-124 448.4 492 51.2
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.2e-123 447.6 451 52.1
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.0e-122 444.5 450 52.9
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 1.4e-122 444.1 467 51.2
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.2e-121 441.0 390 57.4
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 5.7e-121 438.7 456 53.1
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 5.7e-121 438.7 400 55.8
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 7.5e-121 438.3 480 50.2
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 9.7e-121 438.0 463 52.1
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.3e-120 437.6 453 51.9
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.2e-120 436.8 458 51.5
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 4.8e-120 435.6 453 51.2
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.3e-120 435.3 454 51.5
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-119 434.5 393 56.0
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.4e-119 434.1 452 52.2
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.1e-119 433.0 393 56.0
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 4.1e-119 432.6 470 50.9
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 5.3e-119 432.2 456 50.4
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.3e-119 432.2 393 56.7
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.2e-118 431.0 457 51.0
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.2e-118 431.0 397 56.4
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.2e-118 431.0 442 51.8
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.5e-118 429.5 403 56.1
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 5.9e-118 428.7 392 56.1
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.0e-117 427.9 419 55.8
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.3e-117 427.6 400 54.2
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 2.9e-117 426.4 449 51.7
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 2.9e-117 426.4 388 56.4
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 5.0e-117 425.6 390 56.4
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 6.5e-117 425.2 388 56.4
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.1e-116 424.5 393 56.5
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.1e-116 424.5 392 55.9
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 1.5e-116 424.1 395 54.4
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.9e-116 423.7 419 53.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.9e-116 423.7 457 48.8
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 2.5e-116 423.3 388 56.2
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 3.2e-116 422.9 419 53.5
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 4.2e-116 422.5 393 56.5
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 5.5e-116 422.2 388 57.0
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.2e-115 421.0 421 53.9
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 3.6e-115 419.5 452 51.8
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 8.0e-115 418.3 387 56.1
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.0e-115 418.3 453 50.3
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.4e-114 417.5 456 49.3
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.8e-114 417.2 344 60.8
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 2.3e-114 416.8 448 50.4
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.3e-114 416.8 407 53.1
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 4.0e-114 416.0 454 50.9
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-113 414.1 436 51.4
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.6e-113 413.3 458 48.9
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 3.4e-113 412.9 425 53.6
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 7.5e-113 411.8 389 56.3
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.2e-112 410.2 449 49.2
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.2e-112 410.2 381 54.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 3.7e-112 409.5 404 54.7
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 4.8e-112 409.1 387 55.3
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 6.3e-112 408.7 453 49.7
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.1e-111 407.9 354 58.5
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.4e-111 407.5 453 50.1
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 7.0e-111 405.2 388 55.9
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 4.5e-110 402.5 388 56.2
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 7.7e-110 401.7 387 55.6
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 7.7e-110 401.7 454 50.0
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 1.3e-109 401.0 456 48.0
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 3.8e-109 399.4 420 51.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 6.5e-109 398.7 453 48.8
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 8.6e-109 398.3 388 56.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 8.6e-109 398.3 388 56.2
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 2.1e-107 393.7 388 54.9
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 3.6e-107 392.9 325 61.2
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 2.3e-106 390.2 388 54.6
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 8.9e-106 388.3 406 51.7
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 8.9e-106 388.3 455 48.1
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 3.4e-105 386.3 382 55.0
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 5.7e-105 385.6 397 51.4
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 1.4e-103 380.9 481 45.9
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 3.1e-103 379.8 423 49.6
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.3e-98 363.6 348 55.5
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 2.0e-97 360.5 456 46.1
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 9.8e-97 358.2 402 49.8
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.1e-86 323.9 396 46.7
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 3.0e-85 320.1 396 46.5
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 3.3e-84 316.6 330 53.0
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 6.0e-78 295.8 418 42.3
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 7.3e-68 262.3 392 40.6
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.9e-64 249.6 211 57.8
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 6.4e-64 249.2 318 45.9
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.6e-49 200.7 194 52.6
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.4e-42 177.6 253 42.3
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.3e-37 161.8 220 43.2
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 3.1e-34 150.6 311 33.4
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.8e-29 134.8 213 39.9
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 2.0e-17 94.7 107 47.7
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 5.9e-17 93.2 125 40.0
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 5.0e-16 90.1 245 29.8
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 8.0e-14 82.8 89 46.1
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.3e-11 75.5 371 21.8
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.7e-11 75.1 140 35.7
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 5.9e-09 66.6 132 27.3
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 2.2e-08 64.7 346 25.1
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 2.2e-08 64.7 346 25.1
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 7.2e-07 59.7 170 25.9
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.6e-06 58.5 124 24.2
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.1e-06 58.2 114 28.1
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 2.1e-06 58.2 116 29.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 2.1e-06 58.2 117 28.2
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 8.0e-06 56.2 117 27.4


User provided reference genes

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