Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.1e-263 912.9 459 100.0
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.0e-245 853.2 444 95.7
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.3e-58 230.3 172 70.3
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.4e-48 198.4 146 60.3
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.4e-48 198.4 146 60.3
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 4.1e-48 196.8 146 59.6
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 6.9e-48 196.1 146 59.6
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.2e-47 195.3 159 56.0
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.2e-47 195.3 141 62.4
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.9e-47 193.0 166 56.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.0e-46 192.2 151 57.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.0e-46 192.2 160 57.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.0e-46 192.2 160 57.5
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.3e-46 191.8 141 61.0
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.7e-46 191.4 141 63.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.9e-46 190.7 150 58.0
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 6.5e-46 189.5 146 56.8
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.4e-45 188.3 152 58.6
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.4e-45 188.3 141 60.3
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.4e-45 188.3 188 46.3
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.9e-45 188.0 145 57.2
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.5e-45 187.6 146 56.2
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 5.5e-45 186.4 154 53.2
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 7.2e-45 186.0 149 57.0
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 7.2e-45 186.0 159 56.0
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.2e-45 186.0 156 55.8
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 9.3e-45 185.7 145 57.9
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 9.3e-45 185.7 145 57.9
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.2e-44 185.3 151 56.3
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.2e-44 185.3 147 56.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.6e-44 184.9 153 56.9
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.6e-44 184.9 147 57.8
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 2.1e-44 184.5 162 54.9
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 3.6e-44 183.7 141 59.6
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 4.6e-44 183.3 147 55.8
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 6.1e-44 183.0 146 58.9
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.9e-44 182.6 156 55.1
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.0e-43 182.2 141 63.1
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.0e-43 182.2 141 63.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.0e-43 182.2 162 54.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.3e-43 181.8 147 55.8
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.8e-43 181.4 147 55.1
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-43 181.4 141 63.1
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.3e-43 181.0 154 53.2
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 2.3e-43 181.0 149 55.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 2.3e-43 181.0 141 63.1
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 2.3e-43 181.0 141 63.1
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 2.3e-43 181.0 141 63.1
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 2.3e-43 181.0 141 63.1
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 3.0e-43 180.6 140 63.6
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 3.9e-43 180.3 139 59.0
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.1e-43 179.9 186 47.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 6.7e-43 179.5 145 57.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-42 178.7 145 56.6
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.5e-42 178.3 145 56.6
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.9e-42 177.9 141 57.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.5e-42 177.6 145 56.6
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 3.3e-42 177.2 150 54.7
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.3e-42 177.2 162 50.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 7.4e-42 176.0 144 54.9
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 7.4e-42 176.0 169 49.1
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 7.4e-42 176.0 169 49.1
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 7.4e-42 176.0 169 49.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 7.4e-42 176.0 145 55.9
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 7.4e-42 176.0 149 53.7
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 9.7e-42 175.6 152 50.7
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.3e-41 175.3 145 54.5
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.6e-41 174.9 145 57.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.2e-41 174.5 145 54.5
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.8e-41 174.1 147 53.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 4.8e-41 173.3 147 55.1
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 6.3e-41 172.9 145 52.4
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 6.3e-41 172.9 146 57.5
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 8.2e-41 172.6 147 53.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 8.2e-41 172.6 145 54.5
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.4e-40 171.8 141 53.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.4e-40 171.8 140 56.4
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.8e-40 171.4 141 58.9
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.8e-40 171.4 141 58.9
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.8e-40 171.4 149 57.0
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 3.1e-40 170.6 142 52.8
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 4.1e-40 170.2 140 56.4
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 5.3e-40 169.9 145 53.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 5.3e-40 169.9 145 53.8
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 6.9e-40 169.5 143 53.1
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-39 168.7 145 56.6
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.2e-39 168.7 147 52.4
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.0e-39 167.9 146 51.4
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 4.5e-39 166.8 138 56.5
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 5.9e-39 166.4 145 53.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.9e-39 166.4 140 55.7
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 7.7e-39 166.0 145 53.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 7.7e-39 166.0 159 50.3
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.7e-38 164.9 147 51.0
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.8e-38 163.7 131 55.7
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 8.5e-38 162.5 157 53.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.1e-37 162.2 147 50.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.1e-37 162.2 154 48.1
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.4e-37 161.8 146 52.1
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 2.5e-37 161.0 131 55.0
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.2e-37 160.6 146 47.9
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 5.5e-37 159.8 121 57.0
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.6e-36 158.3 129 55.8
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 6.1e-36 156.4 153 52.3
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 6.1e-36 156.4 125 54.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 7.9e-36 156.0 163 48.5
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.0e-35 155.6 123 57.7
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.1e-34 152.1 141 56.0
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.3e-33 148.7 129 51.2
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.7e-33 147.1 133 50.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 6.3e-33 146.4 144 54.2
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-32 145.2 161 45.3
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.5e-31 141.7 146 45.9
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.0e-31 141.4 158 44.3
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 3.8e-30 137.1 147 46.3
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 8.5e-30 136.0 151 40.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 7.9e-28 129.4 122 47.5
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 3.0e-27 127.5 126 44.4
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.7e-25 121.7 102 53.9
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.8e-25 120.9 146 43.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.8e-25 120.9 146 43.2
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 6.3e-25 119.8 127 44.9
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.6e-23 115.2 123 47.2
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.6e-23 115.2 92 55.4
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.5e-23 113.6 91 57.1
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 5.9e-23 113.2 91 54.9
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 7.7e-23 112.8 91 56.0
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.0e-22 112.5 91 53.8
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.6e-20 105.1 87 52.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-17 95.5 67 70.1
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.2e-17 94.7 134 38.8
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 3.1e-16 90.9 65 64.6
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.7e-15 87.8 61 65.6
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.7e-14 85.1 79 53.2
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.1e-13 82.4 61 62.3
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.9e-13 81.6 63 52.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 3.2e-13 80.9 59 57.6
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 7.2e-13 79.7 75 50.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.1e-12 78.2 51 64.7
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.7e-12 77.8 78 47.4
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.6e-12 77.4 72 52.8
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 6.8e-11 73.2 48 64.6
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.5e-10 72.0 44 70.5
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.7e-09 68.6 77 41.6
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-09 68.6 58 53.4
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 6.3e-09 66.6 90 42.2
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 6.3e-09 66.6 65 41.5
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 2.0e-07 61.6 153 32.0
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.7e-06 58.5 75 44.0
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 2.9e-06 57.8 55 50.9


User provided reference genes

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