Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 8.2e-47 191.4 251 100.0
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.0e-25 119.8 58 98.3
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.7e-20 104.0 256 75.4
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 1.1e-19 101.3 240 76.7
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.3e-19 99.4 254 79.9
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.6e-19 99.0 241 81.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.2e-18 97.8 258 74.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.6e-18 96.3 241 75.9
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.6e-18 96.3 241 75.9
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 4.7e-18 95.9 244 76.6
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 8.0e-18 95.1 247 80.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 8.0e-18 95.1 248 74.6
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.4e-17 94.4 248 74.6
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.8e-17 94.0 247 75.3
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.8e-17 94.0 241 82.6
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.3e-17 93.6 248 74.2
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 2.3e-17 93.6 246 74.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.2e-17 92.4 241 75.1
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.2e-17 92.4 247 75.7
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 5.2e-17 92.4 247 75.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 6.8e-17 92.0 245 76.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.8e-17 92.0 252 80.6
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 8.9e-17 91.7 252 74.2
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 8.9e-17 91.7 243 75.7
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.0e-16 90.5 241 75.1
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 2.6e-16 90.1 243 77.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 3.4e-16 89.7 245 75.1
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 4.4e-16 89.4 254 80.3
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 4.4e-16 89.4 245 75.5
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 5.7e-16 89.0 249 77.9
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.7e-16 89.0 246 74.8
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 7.5e-16 88.6 263 74.9
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 9.8e-16 88.2 247 79.8
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-15 87.4 254 77.2
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.2e-15 87.0 240 73.8
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 3.7e-15 86.3 257 72.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.7e-15 86.3 246 74.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.9e-15 85.9 235 74.9
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 6.4e-15 85.5 241 80.1
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 8.3e-15 85.1 247 63.2
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 8.3e-15 85.1 244 75.4
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.4e-14 84.3 48 75.0
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.4e-14 84.3 253 74.7
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 2.4e-14 83.6 263 73.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.4e-14 83.6 259 68.3
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.2e-14 83.2 251 74.1
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 3.2e-14 83.2 240 75.8
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 3.2e-14 83.2 241 79.7
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 5.4e-14 82.4 241 79.7
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 5.4e-14 82.4 245 75.9
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 5.4e-14 82.4 255 70.6
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.2e-13 81.3 242 76.0
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.2e-13 81.3 63 65.1
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.2e-13 81.3 246 75.6
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.0e-13 80.5 63 68.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.7e-13 80.1 246 82.1
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.7e-13 80.1 240 79.2
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.5e-13 79.7 247 81.8
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 5.9e-13 79.0 251 69.7
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 5.9e-13 79.0 249 80.7
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.9e-13 79.0 249 80.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 5.9e-13 79.0 235 81.7
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 7.8e-13 78.6 131 87.0
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.8e-13 78.6 233 79.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 7.8e-13 78.6 63 65.1
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 7.8e-13 78.6 48 70.8
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 7.8e-13 78.6 132 84.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.0e-12 78.2 250 79.6
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.3e-12 77.8 234 79.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.7e-12 77.4 66 63.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.3e-12 77.0 244 73.8
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.0e-12 76.6 249 76.7
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.9e-12 76.3 47 74.5
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 3.9e-12 76.3 48 72.9
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 5.0e-12 75.9 49 69.4
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 6.6e-12 75.5 58 67.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 8.6e-12 75.1 49 73.5
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.6e-12 75.1 251 72.1
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 3.3e-11 73.2 243 78.6
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.3e-11 73.2 239 67.8
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 4.3e-11 72.8 49 67.3
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 4.3e-11 72.8 58 65.5
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 7.3e-11 72.0 49 63.3
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-10 71.2 67 55.2
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.6e-10 70.9 56 66.1
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.6e-10 70.9 58 65.5
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.8e-10 70.1 56 64.3
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.6e-10 69.7 245 77.6
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.0e-09 68.2 51 62.7
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.0e-09 68.2 51 62.7
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.0e-09 68.2 48 60.4
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-09 67.8 65 55.4
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.4e-09 67.8 216 83.3
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 4.0e-09 66.2 217 79.3
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 5.2e-09 65.9 54 57.4
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 5.2e-09 65.9 54 57.4
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 5.2e-09 65.9 54 57.4
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 6.8e-09 65.5 55 60.0
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 6.8e-09 65.5 54 59.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.2e-08 64.7 51 60.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.2e-08 64.7 55 61.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.2e-08 64.7 65 56.9
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.6e-08 63.5 59 55.9
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 2.6e-08 63.5 49 59.2
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.4e-08 63.2 44 59.1
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 3.4e-08 63.2 54 59.3
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.4e-08 63.2 54 59.3
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.4e-08 63.2 56 60.7
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.4e-08 63.2 49 59.2
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.4e-08 62.8 55 58.2
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.4e-08 62.8 55 56.4
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 5.8e-08 62.4 56 58.9
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 7.5e-08 62.0 48 58.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 7.5e-08 62.0 48 58.3
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 9.8e-08 61.6 55 60.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 9.8e-08 61.6 55 56.4
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.3e-07 61.2 57 56.1
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.3e-07 61.2 55 56.4
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.3e-07 61.2 46 60.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.3e-07 61.2 54 57.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 2.2e-07 60.5 55 52.7
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.9e-07 60.1 54 50.0
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 2.9e-07 60.1 49 59.2
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 3.7e-07 59.7 55 54.5
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 3.7e-07 59.7 54 51.9
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 4.9e-07 59.3 55 56.4
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 55 56.4
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 55 56.4
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.9e-07 59.3 55 56.4
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.9e-07 59.3 49 57.1
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 6.4e-07 58.9 55 54.5
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.4e-07 58.9 55 54.5
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 8.3e-07 58.5 213 82.6
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 8.3e-07 58.5 55 56.4
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.1e-06 58.2 53 52.8
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.1e-06 58.2 54 55.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.1e-06 58.2 54 55.6
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.4e-06 57.8 58 48.3
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.4e-06 57.8 58 53.4
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 1.4e-06 57.8 46 58.7
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.4e-06 57.8 55 52.7
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.9e-06 57.4 55 54.5
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.1e-06 56.2 50 54.0
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 5.4e-06 55.8 52 55.8
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 5.4e-06 55.8 55 52.7
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 7.0e-06 55.5 217 81.1
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.0e-06 55.5 55 54.5


User provided reference genes

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