Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.5e-178 628.6 316 100.0
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 5.8e-98 361.7 246 70.7
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.3e-97 360.5 244 72.1
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.3e-97 360.5 250 69.6
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.4e-96 355.1 243 71.6
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.2e-95 354.0 250 70.0
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.1e-95 353.2 248 69.0
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.0e-94 350.9 244 67.2
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.3e-94 350.5 244 67.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.7e-94 350.1 248 70.2
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.7e-94 350.1 261 66.3
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.0e-94 349.4 240 70.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 3.9e-94 349.0 243 69.5
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 3.9e-94 349.0 242 69.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 5.1e-94 348.6 244 66.8
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 5.1e-94 348.6 278 63.7
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.1e-93 347.4 246 69.1
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.1e-93 347.4 243 70.4
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.5e-93 347.1 263 64.3
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.5e-93 346.3 249 68.7
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 2.5e-93 346.3 246 69.5
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.5e-93 346.3 265 64.2
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 7.3e-93 344.7 257 66.9
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 9.6e-93 344.4 243 67.1
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.2e-92 344.0 250 67.2
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.2e-92 344.0 265 63.8
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.6e-92 343.6 250 68.4
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 2.8e-92 342.8 246 66.7
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.6e-92 342.4 240 69.2
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 3.6e-92 342.4 293 59.0
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 4.7e-92 342.0 246 67.1
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 4.7e-92 342.0 245 67.3
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 4.7e-92 342.0 244 68.9
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 8.1e-92 341.3 250 66.4
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 8.1e-92 341.3 251 67.3
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 8.1e-92 341.3 275 63.6
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.4e-91 340.5 245 68.2
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.4e-91 340.5 219 75.8
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.8e-91 340.1 245 67.3
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.4e-91 339.7 243 67.5
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 3.1e-91 339.3 274 65.3
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 4.0e-91 339.0 291 61.9
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 4.0e-91 339.0 249 67.1
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.2e-91 338.6 293 59.0
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 6.8e-91 338.2 248 67.7
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 6.8e-91 338.2 293 58.4
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 8.9e-91 337.8 244 67.2
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 8.9e-91 337.8 227 71.8
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.2e-90 337.4 244 66.8
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.5e-90 337.0 225 72.0
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.6e-90 336.3 280 63.6
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 2.6e-90 336.3 259 65.6
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.6e-90 336.3 245 68.2
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 3.4e-90 335.9 243 67.5
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.4e-90 335.9 244 66.8
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 4.4e-90 335.5 250 66.8
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 5.8e-90 335.1 240 68.3
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 9.9e-90 334.3 285 59.3
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 9.9e-90 334.3 255 65.1
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.7e-89 333.6 244 66.8
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.7e-89 333.6 243 67.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.2e-89 333.2 240 67.1
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 2.2e-89 333.2 285 58.9
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.2e-89 333.2 277 61.7
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 2.9e-89 332.8 226 73.0
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 6.4e-89 331.6 232 70.3
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.1e-88 330.9 232 69.8
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.4e-88 330.5 226 70.8
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.9e-88 330.1 271 63.1
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 4.2e-88 328.9 233 69.5
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 7.1e-88 328.2 243 66.7
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 9.3e-88 327.8 278 62.6
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.3e-88 327.8 243 66.3
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.6e-87 327.0 232 68.5
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 2.1e-87 326.6 298 56.4
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 3.5e-87 325.9 246 63.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 3.5e-87 325.9 230 67.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 4.6e-87 325.5 252 65.5
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 4.6e-87 325.5 246 65.0
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.6e-87 325.5 240 65.8
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 6.0e-87 325.1 233 69.5
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 7.8e-87 324.7 225 68.4
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 7.8e-87 324.7 332 53.6
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 5.1e-86 322.0 257 63.0
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 9.6e-85 317.8 244 64.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 2.1e-84 316.6 225 67.1
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 4.8e-84 315.5 249 63.1
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 8.1e-84 314.7 246 63.8
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.4e-80 303.9 215 70.7
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 7.1e-80 301.6 244 63.1
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 9.3e-80 301.2 229 63.3
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 6.0e-79 298.5 227 67.4
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 5.1e-78 295.4 208 70.7
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 5.1e-78 295.4 249 62.2
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 6.6e-78 295.0 214 67.8
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.5e-77 293.9 247 59.9
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.5e-77 293.9 243 59.7
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.9e-77 293.5 289 54.3
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 9.6e-77 291.2 244 58.6
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 4.8e-76 288.9 250 59.6
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.6e-71 273.9 201 67.7
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.8e-70 270.4 250 56.0
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 5.6e-69 265.4 238 56.3
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 2.1e-68 263.5 233 58.8
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 7.9e-63 245.0 166 71.1
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.3e-62 244.2 206 60.7
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 2.1e-60 236.9 243 51.0
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.8e-59 233.8 140 80.7
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.0e-49 201.4 213 49.3
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.3e-45 186.0 147 63.3
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 6.9e-43 178.7 229 45.4
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.2e-39 167.9 214 44.4
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.1e-31 140.6 162 47.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 1.8e-30 137.5 85 75.3
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.4e-27 127.9 136 52.2
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 6.5e-25 119.0 83 67.5
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 5.2e-22 109.4 68 72.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.0e-18 97.4 63 69.8
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.0e-17 95.1 141 40.4
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 8.5e-17 92.0 61 68.9
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.9e-16 90.9 56 73.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 9.4e-16 88.6 147 40.8
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 3.0e-14 83.6 58 69.0
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 3.4e-13 80.1 170 34.7
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 9.8e-13 78.6 70 57.1
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 4.9e-12 76.3 66 57.6
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 4.1e-11 73.2 51 70.6
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 7.7e-10 68.9 49 67.3
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 2.3e-09 67.4 97 38.1
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 6.6e-09 65.9 53 62.3
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 6.6e-09 65.9 46 63.0
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 9.5e-08 62.0 43 62.8
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.8e-06 57.8 78 42.3
RcHm_v2.0_Chr1g0313101 Rosa chinensis HOM05D005950 ORTHO05D342078 3.0e-06 57.0 29 86.2


User provided reference genes

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