Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 7.5e-121 437.2 219 100.0
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.7e-115 417.9 211 99.1
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.5e-81 306.6 213 70.4
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.6e-81 305.8 212 71.7
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 3.4e-81 305.4 213 70.0
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.5e-81 305.1 218 67.9
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 5.8e-81 304.7 213 69.5
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 7.6e-81 304.3 218 67.4
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.7e-80 303.1 207 70.0
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.9e-80 302.4 218 69.3
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 3.8e-80 302.0 211 68.7
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 6.4e-80 301.2 213 69.0
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.1e-79 300.4 213 69.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.9e-79 299.7 205 71.7
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 4.2e-79 298.5 213 70.9
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 9.3e-79 297.4 214 68.2
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.5e-78 295.4 204 72.1
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 4.6e-78 295.0 209 67.9
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 7.9e-78 294.3 206 70.9
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 7.9e-78 294.3 210 67.6
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.0e-77 293.9 212 68.9
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.7e-77 293.1 208 71.2
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.3e-77 292.7 218 66.1
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 3.9e-77 292.0 213 68.1
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 5.1e-77 291.6 217 66.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 6.6e-77 291.2 217 65.0
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 8.7e-77 290.8 214 64.5
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.9e-76 289.7 205 66.8
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.9e-76 289.7 217 65.4
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.9e-76 289.7 209 66.0
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.5e-76 289.3 210 65.7
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 3.3e-76 288.9 217 64.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 4.3e-76 288.5 205 70.2
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 5.6e-76 288.1 212 67.9
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 7.4e-76 287.7 207 68.6
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 7.4e-76 287.7 213 67.1
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 9.6e-76 287.3 203 70.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.3e-75 287.0 211 65.9
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.6e-75 286.6 211 64.9
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 1.6e-75 286.6 210 68.1
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.6e-75 286.6 200 71.0
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.1e-75 286.2 217 65.0
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.1e-75 286.2 210 65.2
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.8e-75 285.8 212 66.0
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 2.8e-75 285.8 215 64.7
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.8e-75 285.8 203 68.0
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 2.8e-75 285.8 205 68.8
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.6e-75 285.4 216 64.8
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 4.8e-75 285.0 203 70.0
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 4.8e-75 285.0 205 67.8
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 8.1e-75 284.3 216 63.4
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.1e-74 283.9 203 68.0
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-74 283.9 212 64.6
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.1e-74 283.9 203 67.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.1e-74 282.3 203 70.4
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.1e-74 282.3 216 62.5
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.0e-74 282.0 211 66.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 5.3e-74 281.6 200 69.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 5.3e-74 281.6 218 63.3
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 9.0e-74 280.8 203 68.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 9.0e-74 280.8 200 69.5
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.2e-73 280.4 203 69.0
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-73 280.4 200 69.5
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.2e-73 280.4 200 69.5
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.2e-73 280.4 212 66.0
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.2e-73 280.4 212 65.6
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.5e-73 280.0 203 69.0
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-73 280.0 200 69.0
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.0e-73 279.6 200 69.0
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 2.0e-73 279.6 212 65.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 3.4e-73 278.9 206 66.0
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.4e-73 278.9 212 61.8
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.8e-73 278.1 212 65.6
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 5.8e-73 278.1 206 66.0
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 7.6e-73 277.7 212 64.6
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 9.9e-73 277.3 211 64.9
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.7e-72 276.6 208 63.9
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.7e-72 276.6 208 63.9
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.2e-72 276.2 212 64.6
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 2.9e-72 275.8 201 70.6
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 3.8e-72 275.4 212 63.7
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 6.4e-72 274.6 213 59.6
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.4e-71 273.5 204 66.2
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 4.2e-71 271.9 203 65.0
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 4.2e-71 271.9 210 62.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 7.1e-71 271.2 205 63.9
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.1e-70 269.6 203 64.0
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.8e-69 266.5 217 59.0
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.8e-69 266.5 207 63.8
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 3.9e-69 265.4 208 60.6
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.9e-69 265.4 205 60.5
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 5.1e-69 265.0 214 59.3
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.1e-68 263.8 212 60.4
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.1e-68 263.8 219 58.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.5e-68 262.7 204 64.2
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 5.6e-68 261.5 204 62.3
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 9.6e-68 260.8 205 62.4
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 2.0e-65 253.1 183 69.9
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 5.8e-65 251.5 186 68.3
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.1e-63 247.3 215 57.7
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.2e-63 245.7 269 50.6
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 5.5e-63 245.0 200 58.5
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 7.9e-62 241.1 175 66.9
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.0e-61 240.7 212 59.4
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 3.0e-61 239.2 172 69.2
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 6.7e-61 238.0 200 61.5
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.1e-60 237.3 213 54.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.5e-60 236.1 167 70.7
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 4.3e-60 235.3 180 67.8
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 7.4e-60 234.6 168 69.0
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-59 233.4 200 61.0
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 6.3e-59 231.5 218 56.4
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 3.1e-58 229.2 157 71.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 6.9e-58 228.0 159 69.8
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.8e-56 222.2 201 54.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.8e-56 222.2 201 54.2
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-55 220.7 191 62.3
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.9e-55 219.9 209 52.6
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 4.2e-55 218.8 156 67.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 5.5e-55 218.4 195 54.9
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 7.2e-55 218.0 211 54.0
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.1e-54 216.5 168 60.7
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.1e-54 216.5 204 55.4
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 2.7e-54 216.1 148 70.9
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 6.1e-54 214.9 208 49.0
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.0e-53 214.2 209 53.6
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.0e-53 212.6 204 54.4
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 7.4e-52 208.0 201 53.7
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 5.3e-50 201.8 212 44.8
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-49 200.7 204 54.9
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.0e-49 199.9 146 67.8
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 2.0e-49 199.9 212 53.8
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.2e-46 190.7 214 49.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 6.3e-43 178.3 204 50.5
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.1e-42 177.6 157 59.2
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.2e-40 169.9 148 50.0
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 2.1e-38 163.3 212 38.7
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.8e-37 160.2 209 41.6
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 7.4e-36 154.8 314 31.5
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 1.7e-35 153.7 206 40.3
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 4.8e-35 152.1 104 76.9
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 9.1e-34 147.9 200 43.0
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.3e-32 144.1 210 41.0
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 1.3e-32 144.1 95 71.6
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.2e-31 139.4 96 68.8
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 5.2e-29 132.1 205 35.6
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 5.7e-28 128.6 203 35.0
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 8.2e-27 124.8 127 47.2
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 9.1e-26 121.3 121 53.7
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.0e-25 120.2 70 82.9
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 4.5e-25 119.0 86 62.8
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.0e-21 107.8 181 39.8
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.3e-21 106.7 90 61.1
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 7.5e-12 75.1 200 34.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.9e-11 72.4 70 57.1
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 9.2e-10 68.2 85 43.5
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.6e-08 62.0 49 65.3
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 9.5e-07 58.2 42 69.0


User provided reference genes

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