Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 4.3e-48 194.5 110 100.0
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 8.1e-23 110.5 110 59.1
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 6.8e-22 107.5 92 68.5
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 1.2e-21 106.7 105 57.1
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 1.2e-21 106.7 105 57.1
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.2e-21 106.7 99 63.6
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 4.4e-21 104.8 109 59.6
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 4.4e-21 104.8 101 61.4
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 5.8e-21 104.4 108 56.5
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 7.6e-21 104.0 100 62.0
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 2.2e-20 102.4 105 58.1
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 2.9e-20 102.1 96 61.5
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 2.9e-20 102.1 105 57.1
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 4.9e-20 101.3 100 59.0
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 6.4e-20 100.9 107 54.2
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 1.4e-19 99.8 101 59.4
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 1.9e-19 99.4 110 52.7
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 3.2e-19 98.6 101 57.4
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 3.2e-19 98.6 97 57.7
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 3.2e-19 98.6 110 56.4
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 3.2e-19 98.6 110 56.4
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 3.2e-19 98.6 100 59.0
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 3.2e-19 98.6 106 53.8
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 4.1e-19 98.2 100 59.0
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 4.1e-19 98.2 108 54.6
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 4.1e-19 98.2 101 58.4
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 5.4e-19 97.8 95 60.0
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 5.4e-19 97.8 106 53.8
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 5.4e-19 97.8 99 61.6
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 5.4e-19 97.8 100 58.0
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 7.1e-19 97.4 110 55.5
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 7.1e-19 97.4 99 58.6
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 9.2e-19 97.1 100 57.0
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 1.2e-18 96.7 93 60.2
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 1.2e-18 96.7 110 54.5
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 1.6e-18 96.3 101 57.4
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 1.6e-18 96.3 108 54.6
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 1.6e-18 96.3 107 55.1
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 2.1e-18 95.9 101 58.4
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 2.7e-18 95.5 101 55.4
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 2.7e-18 95.5 96 56.2
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 2.7e-18 95.5 101 58.4
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 2.7e-18 95.5 99 57.6
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 2.7e-18 95.5 100 59.0
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 2.7e-18 95.5 107 55.1
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 3.5e-18 95.1 106 52.8
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 3.5e-18 95.1 106 52.8
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 3.5e-18 95.1 88 61.4
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 3.5e-18 95.1 95 60.0
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 4.6e-18 94.7 110 55.5
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 6.0e-18 94.4 108 53.7
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 6.0e-18 94.4 93 55.9
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 6.0e-18 94.4 99 55.6
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 6.0e-18 94.4 89 64.0
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 6.0e-18 94.4 104 56.7
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 7.8e-18 94.0 88 62.5
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 7.8e-18 94.0 94 60.6
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 7.8e-18 94.0 101 55.4
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.0e-17 93.6 98 56.1
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.0e-17 93.6 98 56.1
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 1.0e-17 93.6 100 55.0
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.0e-17 93.6 95 58.9
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 1.0e-17 93.6 101 55.4
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.3e-17 93.2 101 56.4
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.3e-17 93.2 97 55.7
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 1.3e-17 93.2 100 56.0
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 1.7e-17 92.8 92 59.8
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 1.7e-17 92.8 106 57.5
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 1.7e-17 92.8 88 61.4
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 1.7e-17 92.8 110 53.6
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 1.7e-17 92.8 98 56.1
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 1.7e-17 92.8 105 54.3
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 1.7e-17 92.8 89 61.8
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 1.7e-17 92.8 92 59.8
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 2.3e-17 92.4 98 56.1
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 5.1e-17 91.3 92 59.8
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 5.1e-17 91.3 101 54.5
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 8.7e-17 90.5 102 55.9
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.1e-16 90.1 100 55.0
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 1.9e-16 89.4 107 47.7
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 4.3e-16 88.2 92 57.6
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 5.6e-16 87.8 122 48.4
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 5.6e-16 87.8 112 52.7
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 7.3e-16 87.4 92 56.5
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 9.6e-16 87.0 109 49.5
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 1.6e-15 86.3 128 47.7
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 1.1e-14 83.6 106 50.0
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 1.4e-14 83.2 109 51.4
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 4.9e-12 74.7 94 45.7
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 1.1e-11 73.6 74 59.5
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 1.1e-11 73.6 79 57.0
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 3.2e-11 72.0 74 59.5
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 4.2e-11 71.6 162 37.0
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 9.3e-11 70.5 89 47.2
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 9.3e-11 70.5 71 59.2
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 6.0e-10 67.8 67 61.2
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 1.0e-09 67.0 78 52.6
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 8.7e-09 63.9 68 60.3
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 1.1e-08 63.5 78 52.6
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 1.9e-08 62.8 107 42.1
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 2.5e-08 62.4 102 44.1
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 3.3e-08 62.0 86 45.3
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 4.3e-08 61.6 58 62.1


User provided reference genes

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