Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.2e-136 488.4 245 100.0
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.6e-31 139.4 244 41.4
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.2e-15 87.8 234 36.3
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 1.2e-13 81.3 221 35.7
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.5e-13 80.9 236 35.2
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 9.9e-13 78.2 66 62.1
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.3e-12 77.8 65 61.5
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 1.3e-12 77.8 65 61.5
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 2.2e-12 77.0 60 61.7
Zm00001eb305470 Zea mays HOM05D003787 ORTHO05D001736 2.2e-12 77.0 125 42.4
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 3.8e-12 76.3 227 32.6
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 4.9e-12 75.9 160 37.5
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.9e-11 73.9 178 34.8
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 4.2e-11 72.8 93 46.2
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 5.4e-11 72.4 138 38.4
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 7.1e-11 72.0 57 66.7
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.6e-10 70.9 142 43.7
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 1.6e-10 70.9 160 37.5
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 1.6e-10 70.9 224 30.4
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.7e-10 70.1 57 61.4
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.7e-10 70.1 55 65.5
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.7e-10 70.1 125 36.0
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 7.8e-10 68.6 193 34.2
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 7.8e-10 68.6 147 38.8
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.0e-09 68.2 152 36.8
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 1.0e-09 68.2 146 37.7
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.0e-09 68.2 51 66.7
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.0e-09 68.2 141 41.1
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.3e-09 67.8 150 36.0
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.3e-09 67.8 152 36.8
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 1.3e-09 67.8 54 66.7
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.7e-09 67.4 54 63.0
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 1.7e-09 67.4 172 32.0
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.7e-09 67.4 56 60.7
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.7e-09 67.4 68 54.4
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 2.3e-09 67.0 54 66.7
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 2.3e-09 67.0 116 39.7
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 2.3e-09 67.0 56 60.7
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 2.3e-09 67.0 73 52.1
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 3.0e-09 66.6 54 64.8
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 3.0e-09 66.6 141 40.4
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 3.0e-09 66.6 152 36.2
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.0e-09 66.6 241 33.6
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 3.0e-09 66.6 59 57.6
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 3.9e-09 66.2 68 55.9
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 3.9e-09 66.2 54 61.1
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 3.9e-09 66.2 143 39.9
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 3.9e-09 66.2 52 61.5
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 3.9e-09 66.2 118 36.4
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 5.1e-09 65.9 54 64.8
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 5.1e-09 65.9 61 60.7
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 6.6e-09 65.5 262 28.6
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 6.6e-09 65.5 177 32.2
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 6.6e-09 65.5 54 63.0
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 6.6e-09 65.5 248 28.2
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 8.7e-09 65.1 54 63.0
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 8.7e-09 65.1 54 63.0
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.1e-08 64.7 54 59.3
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.1e-08 64.7 54 63.0
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 1.1e-08 64.7 106 44.3
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.5e-08 64.3 139 36.7
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.5e-08 64.3 226 31.9
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 1.5e-08 64.3 243 31.3
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 1.5e-08 64.3 79 49.4
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.5e-08 64.3 121 39.7
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 1.5e-08 64.3 69 55.1
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 1.5e-08 64.3 54 63.0
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 1.9e-08 63.9 187 33.7
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 2.5e-08 63.5 57 56.1
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.5e-08 63.5 165 36.4
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 2.5e-08 63.5 88 50.0
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 2.5e-08 63.5 65 55.4
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 2.5e-08 63.5 65 55.4
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 2.5e-08 63.5 54 61.1
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 2.5e-08 63.5 53 58.5
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 3.3e-08 63.2 139 37.4
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 3.3e-08 63.2 68 54.4
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 3.3e-08 63.2 54 59.3
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 3.3e-08 63.2 74 50.0
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 3.3e-08 63.2 54 61.1
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 4.3e-08 62.8 144 37.5
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 4.3e-08 62.8 179 34.6
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 4.3e-08 62.8 179 34.6
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 4.3e-08 62.8 169 34.9
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 4.3e-08 62.8 143 37.1
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 4.3e-08 62.8 221 31.2
Solyc03g059470.1 Solanum lycopersicum HOM05D003787 ORTHO05D001736 4.3e-08 62.8 110 40.0
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 4.3e-08 62.8 91 46.2
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 4.3e-08 62.8 56 55.4
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 5.6e-08 62.4 54 61.1
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 5.6e-08 62.4 59 55.9
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 5.6e-08 62.4 182 33.0
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 5.6e-08 62.4 53 60.4
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 5.6e-08 62.4 80 52.5
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 5.6e-08 62.4 147 34.7
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 5.6e-08 62.4 52 63.5
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 5.6e-08 62.4 141 34.8
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 7.3e-08 62.0 143 36.4
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 7.3e-08 62.0 209 28.7
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 7.3e-08 62.0 126 34.9
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 7.3e-08 62.0 147 38.8
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 9.6e-08 61.6 201 30.8
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 9.6e-08 61.6 54 57.4
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 9.6e-08 61.6 151 31.8
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 9.6e-08 61.6 218 31.2
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.3e-07 61.2 148 34.5
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 1.3e-07 61.2 53 60.4
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.3e-07 61.2 53 58.5
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 1.3e-07 61.2 53 58.5
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 1.3e-07 61.2 63 57.1
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.3e-07 61.2 78 50.0
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 1.6e-07 60.8 61 55.7
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 1.6e-07 60.8 144 36.1
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.1e-07 60.5 135 38.5
CAN.G83.4 Capsicum annuum HOM05D003787 ORTHO05D001736 2.1e-07 60.5 68 52.9
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 2.1e-07 60.5 99 41.4
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 2.1e-07 60.5 187 34.2
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.1e-07 60.5 53 58.5
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.1e-07 60.5 136 34.6
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.1e-07 60.5 135 33.3
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.1e-07 60.5 66 54.5
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.8e-07 60.1 156 35.9
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 2.8e-07 60.1 42 69.0
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 2.8e-07 60.1 137 35.0
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 3.6e-07 59.7 58 56.9
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 3.6e-07 59.7 146 36.3
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 3.6e-07 59.7 181 30.9
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 3.6e-07 59.7 69 52.2
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 3.6e-07 59.7 54 63.0
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 4.8e-07 59.3 193 33.2
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 4.8e-07 59.3 69 50.7
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 6.2e-07 58.9 57 52.6
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 6.2e-07 58.9 130 35.4
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 6.2e-07 58.9 151 33.8
AUR62003095 Chenopodium quinoa HOM05D000094 ORTHO05D002350 8.1e-07 58.5 68 48.5
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 8.1e-07 58.5 179 34.1
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 8.1e-07 58.5 136 33.8
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 8.1e-07 58.5 54 57.4
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 8.1e-07 58.5 168 34.5
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 8.1e-07 58.5 54 57.4
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 8.1e-07 58.5 53 58.5
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 1.1e-06 58.2 47 57.4
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.1e-06 58.2 69 52.2
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.1e-06 58.2 162 35.2
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 1.4e-06 57.8 64 53.1
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 1.4e-06 57.8 261 28.4
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 1.4e-06 57.8 54 55.6
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 1.4e-06 57.8 178 33.1
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.8e-06 57.4 57 59.6
Actinidia16162 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.8e-06 57.4 57 59.6
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 1.8e-06 57.4 157 33.1
AUR62007913 Chenopodium quinoa HOM05D000094 ORTHO05D002350 1.8e-06 57.4 62 54.8
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 1.8e-06 57.4 53 52.8
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 1.8e-06 57.4 53 54.7
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 1.8e-06 57.4 126 33.3
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 2.4e-06 57.0 54 53.7
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 2.4e-06 57.0 54 53.7
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 2.4e-06 57.0 128 32.0
ATR1128G053 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.1e-06 56.6 71 46.5
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 3.1e-06 56.6 52 59.6
ATR1101G066 Amborella trichopoda HOM05D003787 ORTHO05D001736 4.0e-06 56.2 72 48.6
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 4.0e-06 56.2 66 53.0
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 4.0e-06 56.2 148 33.8
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 4.0e-06 56.2 62 51.6
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 4.0e-06 56.2 163 28.8
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.3e-06 55.8 197 33.5
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 5.3e-06 55.8 136 36.8
ATR1101G105 Amborella trichopoda HOM05D003787 ORTHO05D001736 6.9e-06 55.5 43 65.1
Migut.I00333 Erythranthe guttata HOM05D006637 ORTHO05D001736 6.9e-06 55.5 51 54.9
Gohir.A11G033350 Gossypium hirsutum HOM05D006637 ORTHO05D001736 6.9e-06 55.5 51 52.9
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 6.9e-06 55.5 146 32.2
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 6.9e-06 55.5 151 35.8
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 6.9e-06 55.5 138 34.8
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 9.0e-06 55.1 186 29.6
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 9.0e-06 55.1 42 57.1
Gohir.D05G306900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 9.0e-06 55.1 43 55.8
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 9.0e-06 55.1 42 57.1
Gorai.009G326900 Gossypium raimondii HOM05D003787 ORTHO05D001736 9.0e-06 55.1 43 55.8
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 9.0e-06 55.1 115 37.4
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 9.0e-06 55.1 53 52.8


User provided reference genes

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