Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 8.7e-221 770.0 390 100.0
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 9.3e-90 334.7 437 51.9
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 7.2e-82 308.5 534 41.0
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.4e-80 304.3 532 40.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 2.3e-80 303.5 532 40.4
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 6.7e-80 302.0 515 41.9
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 9.7e-79 298.1 535 40.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.1e-77 294.7 516 40.1
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.8e-77 293.9 530 39.2
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 2.4e-77 293.5 482 42.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.5e-76 290.8 532 39.1
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.5e-76 290.8 532 38.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 2.6e-76 290.0 548 38.0
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 4.5e-76 289.3 517 41.0
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.7e-76 288.5 512 41.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 1.0e-75 288.1 513 39.2
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.0e-75 288.1 518 38.8
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.0e-75 288.1 513 39.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.3e-75 287.7 535 39.1
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 1.3e-75 287.7 511 39.5
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.7e-75 287.3 513 39.2
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.7e-75 287.3 535 38.7
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.9e-75 286.6 526 39.7
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.9e-75 286.6 510 40.2
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.9e-75 286.6 516 40.5
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 2.9e-75 286.6 514 39.5
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.8e-75 286.2 532 39.1
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 5.0e-75 285.8 515 39.6
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 6.5e-75 285.4 532 38.9
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 8.5e-75 285.0 519 40.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.1e-74 284.6 517 40.0
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.5e-74 283.5 517 40.2
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 2.5e-74 283.5 519 40.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.2e-74 283.1 526 40.1
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 4.2e-74 282.7 518 39.4
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 4.2e-74 282.7 534 38.6
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 7.2e-74 282.0 543 38.1
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 9.4e-74 281.6 519 38.9
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.2e-73 281.2 512 40.0
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.2e-73 281.2 532 38.0
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.2e-73 281.2 507 39.6
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.6e-73 280.8 535 39.1
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.1e-73 280.4 514 39.1
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 2.7e-73 280.0 511 39.7
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 4.7e-73 279.3 532 38.0
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.1e-73 278.9 517 39.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.0e-72 278.1 515 38.1
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 2.3e-72 276.9 516 38.6
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 3.0e-72 276.6 532 37.8
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 3.0e-72 276.6 509 39.3
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 3.9e-72 276.2 519 38.2
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 6.7e-72 275.4 516 38.8
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 8.8e-72 275.0 519 39.1
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 2.6e-71 273.5 513 38.6
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 3.3e-71 273.1 513 38.2
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 3.7e-70 269.6 520 36.3
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.8e-70 269.2 515 39.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 6.3e-70 268.9 533 37.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 6.3e-70 268.9 530 37.2
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.4e-69 267.7 515 39.0
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.8e-69 267.3 537 37.8
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.4e-69 266.9 515 37.9
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 4.1e-69 266.2 510 37.8
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.0e-69 265.4 515 38.3
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.2e-68 264.6 515 38.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.2e-68 264.6 514 38.5
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.5e-68 263.1 532 36.8
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 3.5e-68 263.1 515 39.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 4.5e-68 262.7 532 37.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.5e-68 262.7 515 38.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 5.9e-68 262.3 532 37.0
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 7.7e-68 261.9 517 37.1
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.0e-67 261.5 516 38.0
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 2.2e-67 260.4 532 36.7
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.9e-67 260.0 530 37.0
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 6.5e-67 258.8 515 37.7
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 8.5e-67 258.5 479 38.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.1e-66 258.1 517 37.7
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.5e-66 256.9 517 37.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.2e-66 256.5 525 36.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.0e-64 249.6 505 37.8
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.1e-63 248.1 534 36.7
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.1e-63 248.1 514 35.2
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 8.2e-62 241.9 523 36.1
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 8.2e-62 241.9 520 35.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.1e-61 241.5 407 40.8
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 9.1e-61 238.4 530 35.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.6e-60 237.7 533 35.3
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 4.5e-60 236.1 522 35.8
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 5.5e-58 229.2 526 34.0
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 5.5e-58 229.2 526 34.0
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 5.5e-58 229.2 532 34.6
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.4e-58 228.4 474 37.1
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.1e-57 227.3 504 35.3
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 2.1e-57 227.3 524 33.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 2.1e-57 227.3 524 33.8
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 8.0e-57 225.3 509 34.6
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 4.0e-56 223.0 394 39.3
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 5.2e-56 222.6 526 33.1
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 6.8e-56 222.2 506 35.6
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 6.8e-56 222.2 506 35.6
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 8.8e-56 221.9 534 33.7
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.5e-55 221.1 504 34.9
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.5e-55 221.1 504 34.9
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.4e-55 219.5 508 35.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 5.7e-55 219.2 532 33.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 7.5e-55 218.8 504 34.3
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 9.8e-55 218.4 506 36.2
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.4e-53 214.5 541 32.5
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 5.4e-53 212.6 529 32.5
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 5.4e-53 212.6 529 32.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.5e-52 209.9 531 32.4
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.0e-51 208.4 533 30.0
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.3e-51 208.0 472 35.2
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-51 207.6 529 31.9
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 8.5e-51 205.3 540 31.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.3e-48 197.2 531 31.5
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.0e-43 181.8 561 29.6
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.0e-43 179.5 513 30.0
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.5e-42 177.2 177 56.5
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 5.2e-40 169.5 421 34.2
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 2.6e-39 167.2 146 61.6
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.3e-38 164.9 232 46.1
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 2.9e-38 163.7 132 68.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.0e-35 155.2 230 46.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.0e-32 145.2 396 31.1
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 6.0e-28 129.4 383 29.5
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.6e-26 122.9 218 39.0
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.1e-24 118.6 135 47.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.5e-18 97.4 504 23.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 8.1e-17 92.4 269 29.7
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 8.1e-17 92.4 505 22.2
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.4e-13 81.6 81 51.9
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 7.1e-13 79.3 79 59.5
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.6e-12 78.2 61 60.7
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.3e-11 75.1 325 25.8
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 4.0e-08 63.5 73 43.8
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.7e-06 58.2 123 34.1
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.9e-06 57.4 207 28.0


User provided reference genes

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