Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 6.8e-125 450.7 226 100.0
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 4.0e-85 318.5 205 71.7
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 4.4e-84 315.1 202 71.3
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 4.4e-84 315.1 206 71.8
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 7.6e-84 314.3 205 70.7
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 4.9e-83 311.6 207 71.0
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.1e-82 310.5 205 71.2
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 2.4e-82 309.3 207 71.0
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 2.4e-82 309.3 216 68.1
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 9.3e-82 307.4 209 67.9
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 9.3e-82 307.4 213 69.0
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 9.3e-82 307.4 213 69.0
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.2e-81 307.0 204 69.6
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.6e-81 306.6 207 70.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.1e-81 306.2 207 69.1
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.1e-81 306.2 213 68.5
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 2.7e-81 305.8 207 68.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 1.0e-80 303.9 199 71.9
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 1.3e-80 303.5 222 65.3
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.3e-80 303.5 213 66.7
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.3e-80 303.5 221 67.4
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.7e-80 303.1 221 67.4
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.0e-80 302.4 221 67.0
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.0e-80 302.4 198 71.7
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 5.1e-80 301.6 199 72.9
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 6.6e-80 301.2 215 67.4
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.5e-79 300.1 207 69.1
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.5e-79 299.3 223 64.6
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 3.3e-79 298.9 207 66.2
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.3e-79 298.9 203 70.4
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 4.3e-79 298.5 216 65.3
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 4.3e-79 298.5 207 67.6
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 7.3e-79 297.7 216 65.7
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 4.8e-78 295.0 199 68.3
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 4.8e-78 295.0 207 68.6
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 8.1e-78 294.3 207 68.6
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.8e-77 293.1 207 68.1
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 4.0e-77 292.0 216 63.9
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.3e-77 291.6 202 68.3
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 6.9e-77 291.2 212 66.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.5e-76 290.0 190 72.6
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 3.4e-76 288.9 207 65.2
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 7.6e-76 287.7 202 67.3
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.3e-75 287.0 201 66.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.7e-75 286.6 216 63.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 2.2e-75 286.2 206 66.5
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.9e-75 285.8 247 58.3
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 3.8e-75 285.4 202 66.3
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.8e-75 285.4 216 63.0
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.8e-75 285.4 216 62.5
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.9e-75 285.0 211 66.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 6.4e-75 284.6 202 66.8
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 6.4e-75 284.6 202 65.8
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.1e-74 283.9 199 65.8
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.4e-74 283.5 230 60.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.9e-74 283.1 230 59.6
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.2e-74 282.3 199 65.3
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 3.2e-74 282.3 199 66.3
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 9.3e-74 280.8 215 64.2
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 9.3e-74 280.8 199 67.8
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.2e-73 280.4 199 65.3
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.2e-73 280.4 199 65.3
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 4.6e-73 278.5 192 70.8
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.0e-73 278.1 235 58.3
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 7.9e-73 277.7 201 64.7
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.7e-72 276.6 204 63.7
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.7e-72 276.6 201 66.7
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 3.9e-72 275.4 176 73.9
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 8.7e-72 274.2 214 61.2
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-71 273.9 214 61.2
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 7.3e-71 271.2 271 51.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.6e-70 270.0 216 62.5
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.2e-70 268.1 249 56.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.4e-69 266.9 223 58.3
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.4e-69 266.2 216 60.6
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 5.3e-69 265.0 207 62.3
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.9e-66 256.5 187 66.3
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 6.0e-65 251.5 180 66.1
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.8e-64 250.0 207 59.9
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.5e-63 246.9 205 59.0
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 9.6e-63 244.2 172 68.0
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 6.2e-62 241.5 169 67.5
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.4e-61 240.4 177 67.2
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 5.8e-60 235.0 180 63.9
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 5.8e-60 235.0 174 64.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 7.9e-57 224.6 199 57.8
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 8.2e-54 214.5 207 53.6
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.1e-53 214.2 207 51.2
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 2.4e-53 213.0 205 51.7
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.3e-51 207.2 204 47.5
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 7.9e-49 198.0 174 55.7
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 1.0e-48 197.6 371 36.1
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 3.9e-48 195.7 230 49.6
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.3e-46 190.7 200 45.5
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 7.7e-44 181.4 205 43.9
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 7.7e-44 181.4 134 64.9
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.7e-43 180.3 136 66.2
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.9e-42 176.8 136 63.2
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 4.2e-42 175.6 173 52.6
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.1e-37 161.0 278 39.6
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.5e-36 157.1 156 54.5
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.7e-30 137.1 102 66.7
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 3.7e-30 136.0 139 49.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.7e-27 127.1 215 39.5
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 2.9e-27 126.3 150 49.3
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 3.2e-26 122.9 216 33.3
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 8.0e-25 118.2 141 44.7
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.0e-24 117.9 134 50.7
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 1.1e-23 114.4 71 66.2
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.6e-23 113.2 70 70.0
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.9e-18 97.1 57 75.4
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 9.8e-15 84.7 114 45.6
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 5.4e-13 79.0 85 47.1
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 6.5e-11 72.0 52 61.5
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 1.2e-09 67.8 205 28.8
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 2.3e-08 63.5 51 62.7
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 8.8e-08 61.6 52 50.0
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.8e-07 58.2 36 66.7
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 2.2e-06 57.0 28 78.6


User provided reference genes

Program Settings