Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 8.0e-71 270.4 144 100.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.1e-23 112.8 156 48.1
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 8.1e-23 110.9 150 49.3
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.2e-22 108.2 153 45.8
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 9.9e-21 104.0 158 44.3
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.7e-20 103.2 154 43.5
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.9e-20 101.7 122 50.0
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 6.4e-20 101.3 154 43.5
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 8.4e-20 100.9 154 42.2
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 8.4e-20 100.9 150 45.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.1e-19 100.5 151 43.7
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.2e-19 99.0 147 48.3
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 3.2e-19 99.0 151 43.7
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 9.3e-19 97.4 149 40.9
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 9.3e-19 97.4 135 47.4
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.2e-18 97.1 122 47.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.6e-18 96.7 141 48.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.6e-18 96.7 158 44.3
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.1e-18 96.3 162 43.2
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.7e-18 95.9 145 45.5
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.7e-18 95.9 155 44.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.0e-18 94.7 132 45.5
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.0e-17 94.0 122 45.9
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.7e-17 93.2 152 42.8
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.0e-17 92.4 148 43.9
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 3.0e-17 92.4 156 39.7
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.9e-17 92.0 117 47.9
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.9e-17 92.0 125 44.8
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.9e-17 92.0 142 42.3
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 3.9e-17 92.0 151 40.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 5.1e-17 91.7 118 44.9
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.1e-17 91.7 151 40.4
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.6e-17 91.3 156 44.9
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.6e-17 91.3 159 42.8
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 6.6e-17 91.3 130 45.4
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 8.7e-17 90.9 159 42.8
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.7e-17 90.9 159 42.8
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.1e-16 90.5 137 43.1
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.1e-16 90.5 154 40.9
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.1e-16 90.5 153 40.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.9e-16 89.7 157 42.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.3e-16 88.6 151 41.7
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.3e-16 88.6 141 41.8
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 4.3e-16 88.6 149 42.3
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.6e-16 88.2 151 40.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 9.6e-16 87.4 153 36.6
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 9.6e-16 87.4 144 41.7
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.3e-15 87.0 141 40.4
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-15 86.7 150 40.7
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.1e-15 86.3 154 40.9
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.8e-15 85.9 124 42.7
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.8e-15 85.9 158 38.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.8e-15 85.9 158 38.0
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.8e-15 85.9 144 41.7
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 3.6e-15 85.5 125 43.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-15 85.1 158 39.9
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 4.8e-15 85.1 131 42.0
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.8e-15 85.1 150 40.0
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 6.2e-15 84.7 150 40.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 6.2e-15 84.7 155 38.7
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-14 83.6 116 44.8
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.4e-14 83.6 144 40.3
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.4e-14 83.6 131 42.0
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.8e-14 83.2 148 37.8
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-14 82.0 151 39.7
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-14 82.0 151 39.7
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 5.3e-14 81.6 122 44.3
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.3e-14 81.6 116 41.4
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 6.9e-14 81.3 124 41.9
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.5e-13 80.1 126 42.9
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-13 80.1 145 37.2
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.0e-13 79.7 115 40.9
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-13 79.7 157 36.9
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.6e-13 79.3 150 40.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.6e-13 79.3 105 47.6
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.4e-13 79.0 150 39.3
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-13 78.2 105 47.6
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 7.6e-13 77.8 119 43.7
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 7.6e-13 77.8 151 41.1
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 9.9e-13 77.4 155 38.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 9.9e-13 77.4 105 45.7
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-12 76.3 129 40.3
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-12 76.3 159 36.5
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.9e-12 75.9 112 44.6
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-12 75.9 105 44.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-12 75.9 105 44.8
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-12 75.9 105 44.8
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-12 75.9 105 44.8
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 4.9e-12 75.1 105 46.7
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 4.9e-12 75.1 105 46.7
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 6.4e-12 74.7 159 37.7
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.4e-12 74.7 118 42.4
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-12 74.7 159 35.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 6.4e-12 74.7 89 46.1
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 8.4e-12 74.3 119 44.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 8.4e-12 74.3 105 46.7
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-11 73.9 137 35.8
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.1e-11 73.9 137 37.2
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.4e-11 73.6 122 40.2
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-11 73.6 137 35.8
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-11 73.2 112 42.9
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-11 73.2 140 39.3
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-11 73.2 150 36.0
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 3.2e-11 72.4 150 38.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-11 72.4 146 35.6
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 5.4e-11 71.6 151 38.4
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 7.1e-11 71.2 120 39.2
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 9.3e-11 70.9 152 36.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-10 70.5 118 40.7
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.6e-10 70.1 142 38.0
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.6e-10 70.1 122 41.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-10 69.7 149 35.6
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.1e-10 69.7 135 40.7
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-10 69.7 103 43.7
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-10 69.3 160 36.9
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 4.6e-10 68.6 150 35.3
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.6e-10 68.6 131 37.4
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 4.6e-10 68.6 117 41.0
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.0e-10 68.2 128 39.8
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 6.0e-10 68.2 121 36.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 6.0e-10 68.2 102 43.1
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.9e-10 67.8 137 38.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 7.9e-10 67.8 119 41.2
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.0e-09 67.4 117 39.3
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.0e-09 67.4 142 34.5
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.8e-09 66.6 152 34.9
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-09 66.6 157 36.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-09 66.6 143 32.2
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 2.3e-09 66.2 150 36.7
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.0e-09 65.9 122 39.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.9e-09 65.5 136 37.5
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.9e-09 65.5 157 36.3
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 3.9e-09 65.5 143 33.6
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 5.1e-09 65.1 115 39.1
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-08 63.9 149 35.6
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.1e-08 63.9 147 30.6
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.9e-08 63.2 123 39.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.5e-08 62.8 120 37.5
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-08 62.8 119 37.0
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.3e-08 62.4 115 36.5
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 5.6e-08 61.6 118 38.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 7.4e-08 61.2 118 34.7
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 9.6e-08 60.8 111 36.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 9.6e-08 60.8 136 31.6
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.6e-08 60.8 149 34.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.3e-07 60.5 140 33.6
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.3e-07 60.5 118 33.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.6e-07 60.1 104 36.5
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-07 60.1 97 40.2
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.1e-07 59.7 152 34.9
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 3.7e-07 58.9 128 35.2
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.7e-07 58.9 133 33.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.8e-07 58.5 149 35.6
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.1e-06 57.4 154 33.1
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-06 57.4 126 31.0
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-06 57.0 121 38.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.8e-06 56.6 93 41.9
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.8e-06 56.6 93 41.9
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.4e-06 56.2 117 35.0
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 2.4e-06 56.2 117 35.0
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 3.1e-06 55.8 111 35.1
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 4.0e-06 55.5 117 34.2
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 4.0e-06 55.5 117 34.2
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.3e-06 55.1 116 31.9
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.9e-06 54.7 100 41.0
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 9.0e-06 54.3 79 41.8


User provided reference genes

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