Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 4.4e-23 110.5 60 100.0
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 8.6e-11 69.7 54 72.2
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 1.1e-10 69.3 53 69.8
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.5e-10 68.9 61 67.2
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 1.9e-10 68.6 54 70.4
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 4.3e-10 67.4 61 65.6
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 4.3e-10 67.4 55 65.5
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 4.3e-10 67.4 55 65.5
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 5.6e-10 67.0 54 70.4
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 5.6e-10 67.0 55 63.6
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 9.5e-10 66.2 54 66.7
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 9.5e-10 66.2 54 66.7
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 3.6e-09 64.3 55 60.0
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 4.7e-09 63.9 55 63.6
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.2e-09 63.5 54 66.7
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.2e-09 63.5 54 66.7
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 6.2e-09 63.5 54 64.8
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 6.2e-09 63.5 54 64.8
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 8.1e-09 63.2 53 64.2
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.1e-08 62.8 55 60.0
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.1e-08 62.8 54 64.8
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 1.4e-08 62.4 55 58.2
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.4e-08 62.4 55 61.8
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.8e-08 62.0 55 60.0
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.8e-08 62.0 54 64.8
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.8e-08 62.0 55 63.6
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.8e-08 62.0 52 61.5
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.3e-08 61.6 55 58.2
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 2.3e-08 61.6 55 60.0
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.3e-08 61.6 54 63.0
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.3e-08 61.6 54 63.0
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.1e-08 61.2 54 63.0
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 3.1e-08 61.2 55 60.0
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 3.1e-08 61.2 55 60.0
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 3.1e-08 61.2 55 58.2
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 3.1e-08 61.2 55 60.0
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 3.1e-08 61.2 55 58.2
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 4.0e-08 60.8 55 60.0
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 4.0e-08 60.8 53 64.2
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 4.0e-08 60.8 55 60.0
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 5.2e-08 60.5 55 60.0
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 5.2e-08 60.5 55 60.0
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 6.8e-08 60.1 55 56.4
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 6.8e-08 60.1 61 60.7
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 8.9e-08 59.7 55 58.2
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 8.9e-08 59.7 55 60.0
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 1.2e-07 59.3 55 58.2
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.2e-07 59.3 54 61.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.2e-07 59.3 55 58.2
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.6e-07 58.2 55 56.4
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 2.6e-07 58.2 55 56.4
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 2.6e-07 58.2 58 56.9
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 2.6e-07 58.2 55 56.4
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 3.4e-07 57.8 55 58.2
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 4.4e-07 57.4 55 56.4
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 4.4e-07 57.4 53 58.5
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 4.4e-07 57.4 53 58.5
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 5.8e-07 57.0 54 59.3
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 5.8e-07 57.0 55 54.5
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 5.8e-07 57.0 54 59.3
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 5.8e-07 57.0 55 56.4
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 5.8e-07 57.0 56 57.1
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 5.8e-07 57.0 59 57.6
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 5.8e-07 57.0 55 56.4
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 7.6e-07 56.6 55 56.4
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 7.6e-07 56.6 60 55.0
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 9.9e-07 56.2 39 71.8
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.3e-06 55.8 59 55.9
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-06 55.8 59 55.9
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-06 55.8 59 55.9
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-06 55.8 59 55.9
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-06 55.8 59 55.9
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.3e-06 55.8 59 55.9
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.2e-06 55.1 54 61.1
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 2.9e-06 54.7 55 54.5
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.9e-06 54.7 37 73.0
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.7e-06 54.3 54 57.4
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 3.7e-06 54.3 55 52.7
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 4.9e-06 53.9 55 52.7
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 6.4e-06 53.5 55 52.7
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 8.4e-06 53.1 55 52.7


User provided reference genes

Program Settings