Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 0.0e+00 1226.5 586 100.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.8e-190 669.8 610 55.7
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.2e-184 650.6 675 50.7
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.1e-182 644.0 681 49.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.1e-182 642.1 690 49.6
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 9.2e-182 641.0 671 50.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.0e-181 639.8 684 49.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.5e-181 638.6 652 50.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.9e-180 636.0 616 53.1
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 4.3e-179 632.1 669 48.6
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.6e-179 631.7 674 49.4
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 9.5e-179 630.9 642 50.8
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.1e-178 629.8 674 48.7
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.6e-178 629.0 688 48.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.7e-178 628.6 675 48.3
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.4e-177 627.1 672 47.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.0e-177 625.9 674 48.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.7e-175 620.2 673 47.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.9e-175 619.4 672 48.5
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.3e-175 617.8 673 48.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 8.3e-175 617.8 672 47.8
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-174 617.5 677 48.4
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.1e-174 617.5 680 49.1
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.8e-174 616.7 677 48.4
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.8e-174 616.7 669 47.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.8e-174 616.7 665 48.4
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.8e-174 616.7 673 48.0
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 2.4e-174 616.3 673 47.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 3.2e-174 615.9 672 48.2
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 4.1e-174 615.5 680 49.3
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-173 613.6 673 49.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.6e-173 613.6 673 47.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.0e-173 613.2 673 49.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.0e-173 613.2 673 49.2
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.5e-173 612.5 677 47.7
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.6e-173 612.1 667 47.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 4.6e-173 612.1 673 48.3
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 5.9e-173 611.7 673 48.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.0e-172 610.9 670 47.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.7e-172 610.1 669 47.7
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.7e-172 610.1 677 47.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.7e-172 610.1 681 48.2
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.3e-172 609.8 683 47.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.9e-172 609.0 678 47.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.0e-172 608.6 684 48.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 5.0e-172 608.6 703 46.9
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.6e-172 608.2 719 45.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.6e-172 607.8 646 49.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.9e-171 606.7 679 47.3
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.3e-171 604.7 674 47.6
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.2e-170 604.0 677 47.3
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.2e-170 604.0 679 47.0
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.6e-170 603.6 689 46.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.8e-170 602.8 676 47.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.3e-169 599.7 682 46.8
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 6.8e-169 598.2 709 46.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.5e-168 597.0 680 46.8
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.4e-168 595.9 672 46.7
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.4e-168 595.9 686 45.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.4e-168 595.5 669 48.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 4.4e-168 595.5 667 47.8
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.4e-168 595.5 678 47.1
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.4e-168 595.5 678 46.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.8e-168 595.1 678 47.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 5.8e-168 595.1 689 46.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 7.5e-168 594.7 675 46.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.8e-168 594.3 677 46.7
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 4.9e-167 592.0 699 45.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.4e-166 590.5 691 46.3
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.0e-166 588.2 672 45.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.7e-164 583.6 725 44.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.3e-164 583.2 678 47.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.0e-164 582.0 656 47.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-163 580.5 707 45.4
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.9e-163 580.1 674 45.4
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.9e-163 580.1 674 44.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.5e-163 579.7 698 45.7
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 4.3e-163 578.9 677 44.9
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 7.3e-163 578.2 677 44.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.8e-162 576.2 674 45.0
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 4.7e-162 575.5 677 45.1
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 4.7e-162 575.5 677 45.1
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.7e-162 575.5 674 46.4
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.2e-162 575.1 676 44.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 6.2e-162 575.1 679 45.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-161 573.9 676 44.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.4e-161 573.9 674 44.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 4.0e-161 572.4 675 46.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.5e-160 570.5 652 47.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.4e-160 569.3 664 44.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.4e-159 565.1 675 45.5
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.4e-159 565.1 630 47.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 8.3e-159 564.7 674 44.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.1e-157 560.1 614 47.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.7e-157 559.7 678 44.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-156 557.0 717 43.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.7e-156 557.0 678 44.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-156 555.8 657 47.0
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.6e-156 555.1 629 47.1
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.5e-155 553.9 674 44.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.5e-155 553.1 678 44.4
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.3e-155 552.4 676 45.3
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.6e-155 552.0 671 44.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.3e-155 551.6 670 46.3
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 8.1e-154 548.1 581 50.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.4e-153 547.4 680 45.6
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.1e-153 546.2 679 43.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 6.8e-153 545.0 654 45.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-152 544.3 680 42.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-151 540.4 722 42.4
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.1e-150 537.7 694 41.5
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.5e-149 532.7 734 41.3
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.6e-149 532.3 648 45.2
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.3e-147 525.8 345 70.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.3e-147 525.0 678 41.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.0e-144 516.9 842 38.1
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.1e-140 502.3 653 44.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.3e-139 499.2 349 65.6
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 5.6e-139 498.8 593 45.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 9.6e-139 498.0 594 45.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-138 497.7 350 65.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-138 497.7 612 43.5
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.1e-138 496.9 349 64.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.2e-133 481.1 345 65.2
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.3e-132 476.9 673 41.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.3e-132 476.9 675 40.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 5.3e-129 465.7 627 42.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.6e-122 444.1 674 37.7
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 3.7e-122 443.0 328 62.8
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 4.3e-115 419.5 535 43.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.5e-112 411.0 335 54.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.8e-108 397.5 542 41.0
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.2e-101 374.8 530 40.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.6e-99 367.1 395 50.1
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.3e-98 364.8 561 38.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.0e-95 355.1 215 75.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 8.0e-93 345.5 294 53.7
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.9e-88 329.3 223 64.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.2e-75 288.5 287 47.4
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 5.0e-71 273.1 575 31.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 7.8e-56 222.6 464 30.6
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 6.6e-55 219.5 156 66.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.9e-54 218.0 193 52.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.5e-51 208.4 190 51.1
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-51 207.6 139 66.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 4.4e-51 206.8 155 62.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.4e-43 180.6 400 31.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-42 178.3 211 44.1
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.9e-42 177.6 128 63.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.9e-42 177.6 406 30.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-40 170.6 233 39.9
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-39 168.7 120 62.5
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 5.6e-30 136.7 99 63.6
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.6e-30 136.7 99 63.6
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.6e-30 136.7 99 63.6
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.6e-30 136.7 253 34.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.1e-28 131.0 251 33.9
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 6.2e-21 106.7 214 32.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.8e-20 105.1 180 32.8
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.4e-19 100.9 255 27.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.9e-17 95.1 257 25.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 4.6e-16 90.5 59 64.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 8.1e-13 79.7 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 8.1e-13 79.7 48 70.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-12 79.0 72 54.2
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.1e-12 77.8 105 42.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-11 75.9 336 23.2
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.0e-11 75.1 75 52.0
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 4.2e-09 67.4 147 28.6
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 4.3e-06 57.4 155 28.4


User provided reference genes

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