Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.0e-48 196.4 101 100.0
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.5e-10 68.9 82 51.2
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 4.2e-10 68.2 119 44.5
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 7.2e-10 67.4 119 44.5
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 7.2e-10 67.4 119 44.5
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 7.2e-10 67.4 119 44.5
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 9.4e-10 67.0 78 53.8
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 9.4e-10 67.0 78 52.6
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 9.4e-10 67.0 123 43.9
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 9.4e-10 67.0 78 53.8
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.2e-09 66.6 119 43.7
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.2e-09 66.6 78 52.6
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.1e-09 65.9 119 42.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.1e-09 65.9 49 69.4
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.1e-09 65.9 119 43.7
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.7e-09 65.5 47 72.3
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 3.6e-09 65.1 76 48.7
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 4.7e-09 64.7 119 42.0
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.7e-09 64.7 47 72.3
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 4.7e-09 64.7 82 47.6
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 4.7e-09 64.7 78 51.3
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 6.1e-09 64.3 81 49.4
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 6.1e-09 64.3 119 42.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 8.0e-09 63.9 119 43.7
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.0e-08 63.5 81 50.6
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 1.0e-08 63.5 119 41.2
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.0e-08 63.5 119 41.2
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.0e-08 63.5 119 41.2
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 1.0e-08 63.5 119 41.2
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.4e-08 63.2 78 50.0
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.4e-08 63.2 45 73.3
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.4e-08 63.2 119 41.2
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.4e-08 63.2 78 50.0
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.8e-08 62.8 77 50.6
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.8e-08 62.8 80 48.8
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.8e-08 62.8 77 50.6
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.8e-08 62.8 78 50.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.8e-08 62.8 77 51.9
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.8e-08 62.8 77 50.6
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.8e-08 62.8 77 50.6
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.8e-08 62.8 77 50.6
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.3e-08 62.4 119 42.0
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 2.3e-08 62.4 77 51.9
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.3e-08 62.4 78 50.0
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.0e-08 62.0 113 43.4
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 3.0e-08 62.0 119 42.0
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.0e-08 62.0 119 42.0
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.0e-08 62.0 119 42.9
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 3.0e-08 62.0 123 39.8
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.0e-08 62.0 119 41.2
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 4.0e-08 61.6 77 49.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 4.0e-08 61.6 78 47.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.0e-08 61.6 77 50.6
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 4.0e-08 61.6 77 50.6
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 4.0e-08 61.6 78 47.4
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 5.2e-08 61.2 81 48.1
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.2e-08 61.2 77 49.4
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 5.2e-08 61.2 77 49.4
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.2e-08 61.2 77 49.4
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 5.2e-08 61.2 119 40.3
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 5.2e-08 61.2 119 41.2
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.2e-08 61.2 78 48.7
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.7e-08 60.8 81 46.9
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.7e-08 60.8 119 42.0
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.7e-08 60.8 119 42.0
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.7e-08 60.8 78 48.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.7e-08 60.8 119 41.2
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 6.7e-08 60.8 119 41.2
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 6.7e-08 60.8 77 49.4
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 8.8e-08 60.5 53 56.6
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-07 60.1 119 42.0
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.1e-07 60.1 78 47.4
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.1e-07 60.1 49 65.3
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.0e-07 59.3 78 46.2
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.6e-07 58.9 70 51.4
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 2.6e-07 58.9 70 51.4
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 3.3e-07 58.5 77 48.1
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 3.3e-07 58.5 77 48.1
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.3e-07 58.5 38 73.7
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 4.4e-07 58.2 71 49.3
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 5.7e-07 57.8 78 44.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 9.7e-07 57.0 92 45.7
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 9.7e-07 57.0 112 41.1
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.3e-06 56.6 37 73.0
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.7e-06 56.2 38 68.4
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.7e-06 56.2 38 68.4
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 2.2e-06 55.8 122 35.2
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 4.8e-06 54.7 70 48.6
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 4.8e-06 54.7 38 71.1
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 4.8e-06 54.7 122 35.2


User provided reference genes

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