Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006697 Vanilla planifolia HOM05D000082 ORTHO05D000038 3.3e-42 174.5 79 100.0
HPP92_014161 Vanilla planifolia HOM05D000082 ORTHO05D000038 1.9e-21 105.5 75 58.7
Potri.006G032100 Populus trichocarpa HOM05D000082 ORTHO05D000038 3.6e-17 91.3 78 52.6
TWI74G0677 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 3.6e-17 91.3 78 51.3
Sabra06G0021400 Salix brachista HOM05D000082 ORTHO05D000038 1.8e-16 89.0 78 53.8
Aqoxy2G00029 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 3.1e-16 88.2 77 49.4
Sabra16G0033300 Salix brachista HOM05D000082 ORTHO05D000038 3.1e-16 88.2 77 51.9
Manes.08G066100 Manihot esculenta HOM05D000082 ORTHO05D000038 1.2e-15 86.3 78 50.0
TAR623G0090 Trochodendron aralioides HOM05D000082 ORTHO05D000038 1.2e-15 86.3 74 50.0
Potri.016G029300 Populus trichocarpa HOM05D000082 ORTHO05D000038 2.0e-15 85.5 78 50.0
Zm00001eb394660 Zea mays HOM05D000082 ORTHO05D000038 2.6e-15 85.1 74 43.2
CiPaw.09G052300 Carya illinoinensis HOM05D000082 ORTHO05D000038 3.4e-15 84.7 76 46.1
CiPaw.10G043900 Carya illinoinensis HOM05D000082 ORTHO05D000038 4.5e-15 84.3 78 48.7
Cfa019949 Carpinus fangiana HOM05D000082 ORTHO05D000038 5.8e-15 84.0 78 48.7
Haze_20290 Corylus avellana HOM05D000082 ORTHO05D000038 5.8e-15 84.0 78 50.0
ClCG10G015980 Citrullus lanatus HOM05D000082 ORTHO05D000038 2.2e-14 82.0 78 47.4
Oeu013454.1 Olea europaea HOM05D000082 ORTHO05D000038 2.2e-14 82.0 86 44.2
Os03g0351800 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 2.9e-14 81.6 74 41.9
TWI77G0819 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 2.9e-14 81.6 76 46.1
TAR369G1047 Trochodendron aralioides HOM05D000082 ORTHO05D000038 2.9e-14 81.6 77 49.4
Migut.N02400 Erythranthe guttata HOM05D000082 ORTHO05D000038 3.8e-14 81.3 82 46.3
PSO541G5182 Papaver somniferum HOM05D000082 ORTHO05D000038 3.8e-14 81.3 74 47.3
Hma1.2p1_1711F.1_g298670 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 4.9e-14 80.9 75 50.7
unitig_27.g25016 Utricularia gibba HOM05D000082 ORTHO05D000038 4.9e-14 80.9 81 49.4
Cpa.g.sc39.6 Carica papaya HOM05D000082 ORTHO05D000038 1.4e-13 79.3 77 46.8
Dinv16766 Davidia involucrata HOM05D000082 ORTHO05D000038 1.4e-13 79.3 85 43.5
Rhsim01G0196000 Rhododendron simsii HOM05D000082 ORTHO05D000038 2.4e-13 78.6 83 43.4
MSTRG.12427 Avicennia marina HOM05D000082 ORTHO05D000038 3.2e-13 78.2 80 43.8
CSS0021895 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 3.2e-13 78.2 85 44.7
CANSAT64G0993 Cannabis sativa HOM05D000082 ORTHO05D000038 3.2e-13 78.2 79 45.6
Ciclev10012279m.g Citrus clementina HOM05D000082 ORTHO05D000038 4.2e-13 77.8 77 45.5
PSO675G6146 Papaver somniferum HOM05D000082 ORTHO05D000038 4.2e-13 77.8 74 45.9
CSS0014646 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 5.4e-13 77.4 86 43.0
Duzib106G1871 Durio zibethinus HOM05D000082 ORTHO05D000038 5.4e-13 77.4 75 46.7
Sed0013028 Sechium edule HOM05D000082 ORTHO05D000038 5.4e-13 77.4 78 46.2
Thecc.05G119300 Theobroma cacao HOM05D000082 ORTHO05D000038 5.4e-13 77.4 75 48.0
Actinidia12280 Actinidia chinensis HOM05D000082 ORTHO05D000038 7.1e-13 77.0 84 44.0
CAN.G714.3 Capsicum annuum HOM05D000082 ORTHO05D000038 7.1e-13 77.0 77 46.8
ClCG04G005960 Citrullus lanatus HOM05D000082 ORTHO05D000038 7.1e-13 77.0 75 50.7
CsaV3_4G029180 Cucumis sativus L. HOM05D000082 ORTHO05D000038 7.1e-13 77.0 75 50.7
Eucgr.K01683 Eucalyptus grandis HOM05D000082 ORTHO05D000038 7.1e-13 77.0 77 45.5
Nn7g37025 Nelumbo nucifera HOM05D000082 ORTHO05D000038 7.1e-13 77.0 78 46.2
CAN.G714.4 Capsicum annuum HOM05D000082 ORTHO05D000038 9.3e-13 76.6 77 45.5
COL.COLO4_33523 Corchorus olitorius HOM05D000082 ORTHO05D000038 9.3e-13 76.6 75 46.7
vmacro14286 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 9.3e-13 76.6 82 42.7
PGR142G1240 Punica granatum HOM05D000082 ORTHO05D000038 1.2e-12 76.3 77 42.9
DCAR_018947 Daucus carota HOM05D000082 ORTHO05D000038 2.7e-12 75.1 82 43.9
Hma1.2p1_2926F.1_g330470 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 4.6e-12 74.3 71 49.3
Os01g0802000 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 4.6e-12 74.3 81 44.4
Prupe.3G067600 Prunus persica HOM05D000082 ORTHO05D000038 4.6e-12 74.3 67 47.8
Sed0008153 Sechium edule HOM05D000082 ORTHO05D000038 4.6e-12 74.3 77 46.8
Solyc01g009000.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 4.6e-12 74.3 77 44.2
Sopen01g004490 Solanum pennellii HOM05D000082 ORTHO05D000038 4.6e-12 74.3 77 45.5
PGSC0003DMG400022704 Solanum tuberosum HOM05D000082 ORTHO05D000038 4.6e-12 74.3 77 45.5
MELO3C019142.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.0e-12 73.9 75 49.3
Lsat_1_v5_gn_5_107360 Lactuca sativa HOM05D000082 ORTHO05D000038 6.0e-12 73.9 88 40.9
Nitab4.5_0002915g0030 Nicotiana tabacum HOM05D000082 ORTHO05D000038 6.0e-12 73.9 77 45.5
Aa31LG3G1270 Aethionema arabicum HOM05D000082 ORTHO05D000038 7.9e-12 73.6 76 42.1
CDE09G1148 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 7.9e-12 73.6 77 39.0
MELO3C009781.2 Cucumis melo HOM05D000082 ORTHO05D000038 7.9e-12 73.6 78 44.9
Dinv17897 Davidia involucrata HOM05D000082 ORTHO05D000038 7.9e-12 73.6 80 43.8
Atru.chr1.1508 Acer truncatum HOM05D000082 ORTHO05D000038 1.0e-11 73.2 78 42.3
Carub.0004s2315 Capsella rubella HOM05D000082 ORTHO05D000038 1.0e-11 73.2 86 41.9
Lj2P826T12 Lonicera japonica HOM05D000082 ORTHO05D000038 1.0e-11 73.2 73 47.9
MD17G1191600 Malus domestica HOM05D000082 ORTHO05D000038 1.0e-11 73.2 68 48.5
Rhsim13G0203100 Rhododendron simsii HOM05D000082 ORTHO05D000038 1.0e-11 73.2 85 42.4
CsaV3_3G040480 Cucumis sativus L. HOM05D000082 ORTHO05D000038 1.3e-11 72.8 78 43.6
Sc09g0001180 Simmondsia chinensis HOM05D000082 ORTHO05D000038 1.3e-11 72.8 40 70.0
Actinidia22478 Actinidia chinensis HOM05D000082 ORTHO05D000038 1.8e-11 72.4 84 40.5
ECA234G4598 Erigeron canadensis HOM05D000082 ORTHO05D000038 2.3e-11 72.0 88 40.9
AL4G38780 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 3.0e-11 71.6 88 40.9
Nn2g14591 Nelumbo nucifera HOM05D000082 ORTHO05D000038 3.0e-11 71.6 77 45.5
Aa31LG10G11400 Aethionema arabicum HOM05D000082 ORTHO05D000038 3.9e-11 71.2 77 44.2
Glyma.14G039000 Glycine max HOM05D000082 ORTHO05D000038 3.9e-11 71.2 98 37.8
LjContig00564g0026287 Lotus japonicus HOM05D000082 ORTHO05D000038 3.9e-11 71.2 95 36.8
THA.LOC104814453 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 3.9e-11 71.2 79 44.3
Lj5g0012015 Lotus japonicus HOM05D000082 ORTHO05D000038 5.1e-11 70.9 76 42.1
QL07p013851 Quercus lobata HOM05D000082 ORTHO05D000038 5.1e-11 70.9 77 44.2
unitig_27.g25133 Utricularia gibba HOM05D000082 ORTHO05D000038 5.1e-11 70.9 77 40.3
CARHR135950 Cardamine hirsuta HOM05D000082 ORTHO05D000038 6.7e-11 70.5 84 41.7
HanXRQChr16g0514281 Helianthus annuus HOM05D000082 ORTHO05D000038 6.7e-11 70.5 76 42.1
Lalb_Chr02g0156711 Lupinus albus HOM05D000082 ORTHO05D000038 6.7e-11 70.5 78 41.0
Psat0s2703g0160 Pisum sativum HOM05D000082 ORTHO05D000038 6.7e-11 70.5 94 38.3
Sp5g05980 Schrenkiella parvula HOM05D000082 ORTHO05D000038 6.7e-11 70.5 78 43.6
Sed0008024 Sechium edule HOM05D000082 ORTHO05D000038 6.7e-11 70.5 78 39.7
Actinidia07009 Actinidia chinensis HOM05D000082 ORTHO05D000038 8.7e-11 70.1 86 41.9
BcaB06g29183 Brassica carinata HOM05D000082 ORTHO05D000038 8.7e-11 70.1 82 42.7
BcaC02g12737 Brassica carinata HOM05D000082 ORTHO05D000038 8.7e-11 70.1 82 42.7
CARHR166690 Cardamine hirsuta HOM05D000082 ORTHO05D000038 1.1e-10 69.7 78 42.3
Thhalv10006102m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 1.1e-10 69.7 78 42.3
Gohir.A09G115250 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.1e-10 69.7 75 42.7
Gohir.D09G111900 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.1e-10 69.7 75 42.7
Gorai.006G129700 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.1e-10 69.7 75 42.7
BcaB02g08363 Brassica carinata HOM05D000082 ORTHO05D000038 1.5e-10 69.3 77 40.3
BcaC07g39966 Brassica carinata HOM05D000082 ORTHO05D000038 2.5e-10 68.6 78 42.3
A09p49460 Brassica napus HOM05D000082 ORTHO05D000038 2.5e-10 68.6 78 42.3
C08p31840 Brassica napus HOM05D000082 ORTHO05D000038 2.5e-10 68.6 78 42.3
BolC8t50803H Brassica oleracea HOM05D000082 ORTHO05D000038 2.5e-10 68.6 78 42.3
BraA09t40399Z Brassica rapa HOM05D000082 ORTHO05D000038 2.5e-10 68.6 78 42.3
Glyma.02G161600 Glycine max HOM05D000082 ORTHO05D000038 2.5e-10 68.6 78 41.0
TPR.G16407 Trifolium pratense HOM05D000082 ORTHO05D000038 2.5e-10 68.6 94 38.3
Glyma.10G101400 Glycine max HOM05D000082 ORTHO05D000038 3.3e-10 68.2 78 41.0
SGA_v2.0_scaffold79G25548 Striga asiatica HOM05D000082 ORTHO05D000038 3.3e-10 68.2 73 42.5
Carub.0005s2332 Capsella rubella HOM05D000082 ORTHO05D000038 4.3e-10 67.8 78 42.3
Hma1.2p1_0039F.1_g024810 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 4.3e-10 67.8 86 43.0
arahy.Tifrunner.gnm1.ann1.BZ8WB7 Arachis hypogaea HOM05D000082 ORTHO05D000038 5.6e-10 67.4 97 36.1
arahy.Tifrunner.gnm1.ann1.K1TE33 Arachis hypogaea HOM05D000082 ORTHO05D000038 5.6e-10 67.4 97 36.1
HanXRQChr10g0295881 Helianthus annuus HOM05D000082 ORTHO05D000038 5.6e-10 67.4 87 36.8
Medtr5g088720 Medicago truncatula HOM05D000082 ORTHO05D000038 5.6e-10 67.4 94 37.2
Phvul.007G243900 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 5.6e-10 67.4 74 40.5
Rhsim04G0118400 Rhododendron simsii HOM05D000082 ORTHO05D000038 5.6e-10 67.4 81 38.3
AT2G40830 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 7.4e-10 67.0 78 38.5
FAN20G1857 Fragaria x ananassa HOM05D000082 ORTHO05D000038 7.4e-10 67.0 67 44.8
Sp4g23160 Schrenkiella parvula HOM05D000082 ORTHO05D000038 7.4e-10 67.0 83 39.8
Ca_13674_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 1.6e-09 65.9 95 35.8
ECA236G2342 Erigeron canadensis HOM05D000082 ORTHO05D000038 1.6e-09 65.9 82 43.9
FvH4_2g38690 Fragaria vesca HOM05D000082 ORTHO05D000038 1.6e-09 65.9 67 44.8
Ah.04g159500 Amaranthus hybridus HOM05D000082 ORTHO05D000038 2.1e-09 65.5 96 35.4
AL5G37950 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 2.1e-09 65.5 78 41.0
BcaB06g29182 Brassica carinata HOM05D000082 ORTHO05D000038 2.1e-09 65.5 81 42.0
BcaC07g40140 Brassica carinata HOM05D000082 ORTHO05D000038 2.1e-09 65.5 82 39.0
C04p02270 Brassica napus HOM05D000082 ORTHO05D000038 2.1e-09 65.5 81 42.0
BolC4t21873H Brassica oleracea HOM05D000082 ORTHO05D000038 2.1e-09 65.5 81 42.0
Thhalv10016932m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 2.1e-09 65.5 77 40.3
Glyma.02G276700 Glycine max HOM05D000082 ORTHO05D000038 2.1e-09 65.5 73 41.1
MD09G1209600 Malus domestica HOM05D000082 ORTHO05D000038 2.1e-09 65.5 56 53.6
TPR.G11951 Trifolium pratense HOM05D000082 ORTHO05D000038 3.7e-09 64.7 72 41.7
CDE02G0864 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 4.8e-09 64.3 76 39.5
AUR62000242 Chenopodium quinoa HOM05D000082 ORTHO05D000038 4.8e-09 64.3 36 63.9
AT3G56580 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 6.2e-09 63.9 77 39.0
FAN27G2544 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.1e-09 63.5 67 43.3
Medtr0067s0100 Medicago truncatula HOM05D000082 ORTHO05D000038 8.1e-09 63.5 91 42.9
Os05g0495000 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 8.1e-09 63.5 77 42.9
VMungo0647G1760 Vigna mungo HOM05D000082 ORTHO05D000038 8.1e-09 63.5 99 35.4
Ca_06174_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 1.1e-08 63.2 73 39.7
SHI24487 Sapria himalayana HOM05D000082 ORTHO05D000038 1.1e-08 63.2 77 33.8
unitig_699.g19461 Utricularia gibba HOM05D000082 ORTHO05D000038 1.1e-08 63.2 74 40.5
THA.LOC104824376 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.4e-08 62.8 85 38.8
Lalb_Chr10g0106021 Lupinus albus HOM05D000082 ORTHO05D000038 1.8e-08 62.4 74 44.6
BraA05t19190Z Brassica rapa HOM05D000082 ORTHO05D000038 2.4e-08 62.0 84 38.1
EL10Ac4g10056 Beta vulgaris HOM05D000082 ORTHO05D000038 3.1e-08 61.6 35 62.9
Eucgr.B03765 Eucalyptus grandis HOM05D000082 ORTHO05D000038 3.1e-08 61.6 72 40.3
A05p01920 Brassica napus HOM05D000082 ORTHO05D000038 4.0e-08 61.2 84 38.1
Lalb_Chr17g0347721 Lupinus albus HOM05D000082 ORTHO05D000038 4.0e-08 61.2 72 38.9
Phvul.008G204700 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 4.0e-08 61.2 73 39.7
A03p22970 Brassica napus HOM05D000082 ORTHO05D000038 6.9e-08 60.5 75 40.0
Cc01_g07110 Coffea canephora HOM05D000082 ORTHO05D000038 6.9e-08 60.5 54 44.4
BraA03t11520Z Brassica rapa HOM05D000082 ORTHO05D000038 9.0e-08 60.1 75 40.0
CANSAT54G1979 Cannabis sativa HOM05D000082 ORTHO05D000038 9.0e-08 60.1 90 34.4
Glyma.13G072800 Glycine max HOM05D000082 ORTHO05D000038 1.2e-07 59.7 73 37.0
vmacro08974 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 1.5e-07 59.3 78 37.2
Dinv16765 Davidia involucrata HOM05D000082 ORTHO05D000038 2.6e-07 58.5 80 37.5
Phvul.006G019600 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.6e-07 58.5 74 35.1
BcaB01g03510 Brassica carinata HOM05D000082 ORTHO05D000038 3.4e-07 58.2 75 38.7
BcaB01g03511 Brassica carinata HOM05D000082 ORTHO05D000038 3.4e-07 58.2 75 38.7
BcaB01g03512 Brassica carinata HOM05D000082 ORTHO05D000038 3.4e-07 58.2 75 38.7
CiPaw.14G107800 Carya illinoinensis HOM05D000082 ORTHO05D000038 3.4e-07 58.2 92 33.7
ClCG03G014340 Citrullus lanatus HOM05D000082 ORTHO05D000038 3.4e-07 58.2 94 33.0
CsaV3_1G041880 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.4e-07 58.2 94 33.0
Sc16g0010840 Simmondsia chinensis HOM05D000082 ORTHO05D000038 3.4e-07 58.2 38 50.0
MELO3C015603.2 Cucumis melo HOM05D000082 ORTHO05D000038 4.5e-07 57.8 94 33.0
RcHm_v2.0_Chr6g0302621 Rosa chinensis HOM05D000082 ORTHO05D000038 7.6e-07 57.0 66 39.4
MSTRG.19772 Avicennia marina HOM05D000082 ORTHO05D000038 9.9e-07 56.6 73 37.0
BcaC01g05373 Brassica carinata HOM05D000082 ORTHO05D000038 9.9e-07 56.6 32 65.6
C03p27250 Brassica napus HOM05D000082 ORTHO05D000038 9.9e-07 56.6 32 65.6
BolC3t15107H Brassica oleracea HOM05D000082 ORTHO05D000038 9.9e-07 56.6 32 65.6
PGR102G1259 Punica granatum HOM05D000082 ORTHO05D000038 9.9e-07 56.6 93 33.3
Aa31LG3G3740 Aethionema arabicum HOM05D000082 ORTHO05D000038 1.3e-06 56.2 83 36.1
CDE08G0325 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 1.7e-06 55.8 64 35.9
Sed0014601 Sechium edule HOM05D000082 ORTHO05D000038 2.2e-06 55.5 95 32.6
Cfa010157 Carpinus fangiana HOM05D000082 ORTHO05D000038 2.9e-06 55.1 73 35.6
Haze_23543 Corylus avellana HOM05D000082 ORTHO05D000038 4.9e-06 54.3 73 35.6
Psat6g011400 Pisum sativum HOM05D000082 ORTHO05D000038 4.9e-06 54.3 54 42.6
Eucgr.J00661 Eucalyptus grandis HOM05D000082 ORTHO05D000038 8.4e-06 53.5 71 35.2
Lj6g0013948 Lotus japonicus HOM05D000082 ORTHO05D000038 8.4e-06 53.5 91 34.1


User provided reference genes

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