Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 0.0e+00 1077.8 539 100.0
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 5.4e-197 691.4 630 61.6
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.6e-196 689.9 536 69.2
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.1e-196 689.5 523 68.6
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 5.1e-195 684.9 619 60.4
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 6.6e-195 684.5 562 63.9
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.2e-191 673.7 517 67.9
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 3.4e-191 672.2 513 68.2
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 4.9e-190 668.3 544 65.1
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 6.4e-190 667.9 561 64.5
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.1e-189 667.2 587 62.2
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 4.2e-189 665.2 604 60.1
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 7.1e-189 664.5 525 66.9
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 9.3e-189 664.1 527 65.7
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 1.2e-188 663.7 513 67.1
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.6e-188 663.3 515 67.4
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.1e-188 662.9 513 67.6
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 3.5e-188 662.1 518 66.4
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 4.6e-188 661.8 604 59.9
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.0e-187 660.6 516 67.2
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 1.3e-187 660.2 508 67.9
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.8e-187 659.8 513 67.6
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.3e-187 659.4 524 67.4
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.9e-187 658.7 524 67.2
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.9e-187 658.7 596 62.6
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 6.7e-187 657.9 567 62.1
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 6.7e-187 657.9 534 64.0
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.1e-186 657.1 549 64.5
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.5e-186 656.8 454 73.3
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 2.5e-186 656.0 526 64.8
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.5e-186 656.0 524 67.2
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.3e-186 655.6 517 66.2
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 4.3e-186 655.2 529 66.9
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 7.4e-186 654.4 606 59.2
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.4e-186 654.4 522 66.9
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 9.6e-186 654.1 489 68.1
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.3e-185 653.7 507 67.1
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.6e-185 653.3 585 59.5
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 1.6e-185 653.3 536 65.3
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.1e-185 652.9 525 65.9
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 2.1e-185 652.9 527 65.1
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 3.7e-185 652.1 510 66.7
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 4.8e-185 651.7 514 67.5
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 1.4e-184 650.2 484 69.0
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 1.4e-184 650.2 516 67.2
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.8e-184 649.8 530 64.7
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.4e-184 649.4 513 67.1
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.1e-184 649.0 558 62.9
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 4.0e-184 648.7 515 65.0
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 6.9e-184 647.9 536 64.2
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.2e-183 647.1 473 69.3
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 1.5e-183 646.7 606 58.7
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.5e-183 646.7 517 65.6
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.5e-183 646.7 481 69.4
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.0e-183 646.4 523 64.8
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 4.5e-183 645.2 619 58.2
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.8e-183 644.8 516 65.9
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 5.8e-183 644.8 530 64.2
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 9.9e-183 644.0 481 69.4
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 9.9e-183 644.0 516 66.7
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 9.9e-183 644.0 577 60.7
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 1.3e-182 643.7 505 66.5
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.2e-182 642.9 522 66.1
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 3.8e-182 642.1 499 65.9
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 4.9e-182 641.7 637 56.5
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 6.4e-182 641.3 579 61.1
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.4e-181 640.2 513 65.1
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 1.9e-181 639.8 530 64.5
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.2e-180 637.1 464 68.3
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.2e-180 637.1 507 65.7
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 2.7e-180 636.0 550 60.9
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 6.0e-180 634.8 508 65.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.3e-179 633.6 447 71.8
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 8.7e-179 630.9 579 58.4
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 7.4e-178 627.9 616 57.5
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.3e-177 627.1 456 68.4
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.6e-177 626.7 596 58.4
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 3.7e-177 625.5 653 53.6
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 6.2e-177 624.8 519 64.2
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 8.2e-177 624.4 511 65.8
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.2e-177 624.4 513 65.1
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.1e-176 624.0 437 71.4
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 2.4e-176 622.9 490 66.1
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.0e-176 622.1 524 64.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 5.3e-176 621.7 623 56.0
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.9e-176 621.3 612 56.5
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 3.4e-175 619.0 608 57.6
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 3.8e-174 615.5 484 65.9
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 4.9e-174 615.1 507 63.3
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 4.2e-173 612.1 451 68.5
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 5.5e-173 611.7 501 63.7
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 9.3e-173 610.9 518 62.0
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 1.2e-172 610.5 450 68.0
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 1.2e-172 610.5 518 62.0
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.2e-172 610.5 579 57.0
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 1.6e-172 610.1 513 62.2
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 2.1e-172 609.8 509 62.7
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 2.1e-172 609.8 440 70.5
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 3.5e-172 609.0 609 55.0
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 1.8e-171 606.7 513 62.8
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.3e-171 606.3 608 55.6
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 2.3e-171 606.3 518 61.2
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 3.0e-171 605.9 509 61.9
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 6.7e-171 604.7 597 55.6
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 8.7e-171 604.4 565 59.6
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 8.7e-171 604.4 611 55.3
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.9e-170 603.2 623 54.6
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 6.3e-169 598.2 518 61.4
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.1e-168 597.4 627 54.1
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.1e-168 597.4 505 62.2
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.1e-168 597.4 514 61.3
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 1.4e-168 597.0 457 65.2
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.8e-168 596.7 523 61.0
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 2.6e-167 592.8 499 61.9
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.3e-166 590.5 487 63.0
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.5e-166 588.2 534 60.3
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.2e-164 583.9 572 59.1
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 6.1e-164 581.6 481 64.0
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.5e-162 577.0 597 54.3
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.3e-161 573.9 450 65.1
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 9.1e-160 567.8 410 69.8
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.2e-157 559.3 451 61.6
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 9.7e-154 547.7 487 61.8
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 9.7e-154 547.7 493 59.6
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.1e-152 544.3 414 67.4
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 3.5e-151 539.3 518 57.5
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.4e-149 533.9 465 63.7
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 8.0e-148 528.1 459 62.3
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 1.4e-147 527.3 378 69.8
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 7.4e-146 521.5 419 65.9
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.6e-143 513.8 515 54.0
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.6e-140 502.7 553 53.7
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.5e-138 497.3 492 57.1
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.8e-136 490.3 518 50.4
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-133 480.7 442 61.1
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 4.2e-133 479.2 537 49.7
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.1e-128 462.6 625 47.2
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 4.2e-125 452.6 445 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.4e-123 447.6 456 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.4e-120 436.8 470 51.5
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.1e-117 427.9 596 46.6
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.2e-116 424.5 366 63.1
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 2.6e-114 416.8 368 62.2
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.4e-112 410.2 462 51.1
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.2e-112 409.8 331 66.2
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.3e-109 399.8 332 64.8
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 2.1e-103 380.6 445 50.3
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.3e-102 377.1 312 63.5
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 9.5e-101 371.7 325 58.5
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 9.9e-98 361.7 345 58.0
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 2.9e-89 333.6 370 52.4
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 5.4e-72 276.2 199 70.9
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 7.9e-71 272.3 208 61.5
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 8.1e-68 262.3 208 67.3
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.5e-66 258.1 204 64.7
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-61 241.1 163 71.2
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 6.7e-54 216.1 186 59.7
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.8e-51 208.0 229 50.7
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 5.0e-49 199.9 140 68.6
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 1.1e-48 198.7 133 70.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.1e-46 189.9 132 68.9
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.3e-45 187.2 106 79.2
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 4.1e-43 180.3 123 69.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 4.2e-40 170.2 156 59.6
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 9.4e-40 169.1 134 66.4
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 1.4e-38 165.2 213 41.3
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 4.4e-37 160.2 628 23.9
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 9.1e-35 152.5 153 56.9
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 2.9e-33 147.5 591 25.4
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 4.8e-28 130.2 92 66.3
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 7.0e-27 126.3 63 85.7
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 2.0e-26 124.8 74 78.4
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.9e-25 120.9 66 84.8
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 6.8e-22 109.8 68 76.5
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.3e-20 105.5 66 75.8
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.1e-19 102.4 100 54.0
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 9.1e-19 99.4 105 59.0
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 3.5e-18 97.4 63 66.7
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 7.2e-16 89.7 127 44.9
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 1.5e-13 82.0 44 81.8
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 1.1e-11 75.9 43 86.0
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 2.5e-08 64.7 36 80.6
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 9.5e-08 62.8 64 51.6
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 1.0e-06 59.3 41 61.0
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 3.0e-06 57.8 32 78.1


User provided reference genes

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