Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.1e-80 300.8 159 100.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.5e-59 231.5 149 81.9
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.0e-42 174.9 115 80.0
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-40 168.7 122 73.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.9e-37 159.1 136 66.9
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-36 156.4 120 70.8
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 9.5e-33 144.1 130 59.2
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-32 143.7 166 54.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.6e-32 143.3 150 53.3
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.8e-32 142.5 150 53.3
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.8e-31 139.8 142 53.5
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.3e-31 139.4 130 60.8
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.1e-31 139.0 130 60.0
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.0e-30 136.3 144 57.6
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.0e-30 136.3 130 59.2
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.6e-30 136.0 142 52.1
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.6e-30 136.0 142 55.6
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.4e-30 135.6 127 56.7
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 4.4e-30 135.2 141 53.9
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 5.8e-30 134.8 127 55.9
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 9.9e-30 134.0 127 55.9
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.7e-29 133.3 129 55.8
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.2e-29 132.9 142 54.2
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 2.2e-29 132.9 127 59.1
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 4.9e-29 131.7 142 54.9
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 6.4e-29 131.3 129 58.9
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 6.4e-29 131.3 142 51.4
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 8.4e-29 131.0 127 54.3
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.4e-29 131.0 108 64.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.1e-28 130.6 131 55.0
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.1e-28 130.6 130 55.4
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-28 129.0 82 81.7
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 4.1e-28 128.6 142 49.3
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 5.4e-28 128.3 142 52.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 5.4e-28 128.3 130 55.4
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.4e-28 128.3 80 82.5
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 7.1e-28 127.9 142 53.5
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.1e-28 127.9 117 60.7
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 9.2e-28 127.5 130 54.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.2e-27 127.1 143 51.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.2e-27 127.1 127 54.3
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.0e-26 124.0 142 52.8
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.0e-26 124.0 141 53.2
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.0e-26 124.0 141 53.2
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.0e-26 124.0 143 55.2
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.3e-26 122.9 134 53.0
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 2.3e-26 122.9 127 54.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 2.3e-26 122.9 157 47.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 3.0e-26 122.5 141 52.5
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 3.0e-26 122.5 151 49.0
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 3.9e-26 122.1 142 48.6
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 3.9e-26 122.1 141 53.2
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 3.9e-26 122.1 147 49.7
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 5.1e-26 121.7 142 52.8
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 5.1e-26 121.7 142 50.0
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 6.6e-26 121.3 127 54.3
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 6.6e-26 121.3 158 45.6
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.6e-26 120.9 151 46.4
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.1e-25 120.6 142 47.2
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.1e-25 120.6 142 47.2
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-25 120.6 91 69.2
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.5e-25 119.4 129 53.5
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 2.5e-25 119.4 151 45.0
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.5e-25 119.4 127 53.5
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.3e-25 119.0 129 52.7
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.3e-25 119.0 143 49.0
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 4.3e-25 118.6 129 53.5
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 4.3e-25 118.6 135 49.6
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 7.3e-25 117.9 151 45.7
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 7.3e-25 117.9 127 54.3
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 7.3e-25 117.9 127 52.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 7.3e-25 117.9 142 49.3
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 9.6e-25 117.5 142 47.9
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 9.6e-25 117.5 142 47.9
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.2e-24 117.1 127 52.8
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.6e-24 116.7 149 45.0
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.1e-24 116.3 142 46.5
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.1e-24 116.3 142 46.5
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.8e-24 115.9 127 52.0
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.8e-24 115.9 142 50.0
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 2.8e-24 115.9 127 52.0
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 3.6e-24 115.5 142 50.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.6e-24 115.5 127 51.2
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.6e-24 115.5 130 51.5
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 4.7e-24 115.2 143 49.7
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.7e-24 115.2 135 51.9
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 8.1e-24 114.4 127 51.2
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.1e-23 114.0 142 47.9
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.1e-23 114.0 147 45.6
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.4e-23 113.6 142 47.2
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.4e-23 113.6 127 50.4
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 1.4e-23 113.6 130 50.0
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.4e-23 113.6 149 44.3
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.4e-23 112.8 147 45.6
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.1e-23 112.5 142 47.9
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.1e-23 112.5 127 49.6
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.1e-23 112.5 127 49.6
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 3.1e-23 112.5 146 42.5
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 4.0e-23 112.1 127 51.2
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 4.0e-23 112.1 142 47.2
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 5.2e-23 111.7 142 46.5
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 5.2e-23 111.7 127 50.4
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 6.8e-23 111.3 127 50.4
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 6.8e-23 111.3 129 49.6
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.0e-22 109.8 143 44.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 2.6e-22 109.4 142 45.8
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 5.8e-22 108.2 142 45.1
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 7.6e-22 107.8 129 51.2
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 9.9e-22 107.5 128 50.0
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.3e-21 107.1 130 46.9
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-21 107.1 141 49.6
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-21 106.3 143 45.5
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.2e-21 106.3 142 44.4
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 2.9e-21 105.9 135 46.7
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 4.9e-21 105.1 128 42.2
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.1e-20 104.0 142 43.7
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-20 103.6 143 44.1
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.4e-20 103.6 135 44.4
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 1.4e-20 103.6 135 43.0
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.4e-20 102.8 130 45.4
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 2.4e-20 102.8 130 45.4
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 5.4e-20 101.7 127 49.6
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 7.1e-20 101.3 121 48.8
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.1e-19 99.8 122 46.7
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.7e-19 99.4 130 43.1
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 6.0e-19 98.2 113 46.9
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 6.0e-19 98.2 113 46.9
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 7.8e-19 97.8 130 50.0
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.0e-18 97.4 102 53.9
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-18 96.3 115 53.0
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 1.9e-17 93.2 152 40.1
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 1.4e-12 77.0 149 38.9
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 7.1e-12 74.7 149 33.6
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 8.7e-10 67.8 89 49.4
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.7e-10 67.8 173 31.8
HPP92_026825 Vanilla planifolia HOM05D003551 ORTHO05D004343 2.4e-07 59.7 33 90.9
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.4e-07 59.7 35 85.7
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.1e-07 59.3 64 48.4
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 4.0e-07 58.9 67 47.8
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 4.0e-07 58.9 66 48.5
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 5.3e-07 58.5 114 38.6
HPP92_028511 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-06 56.6 40 70.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.8e-06 55.1 116 31.9


User provided reference genes

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