Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 5.4e-102 374.4 199 100.0
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-30 136.7 155 53.5
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.4e-27 125.9 219 40.6
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.7e-27 125.2 71 85.9
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.3e-26 121.7 184 41.8
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-25 120.6 71 81.7
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-24 115.9 70 81.4
HPP92_028511 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-19 100.5 65 73.8
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.9e-18 96.3 195 46.7
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.3e-18 94.7 61 75.4
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-17 94.0 112 47.3
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-16 90.9 53 81.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.2e-11 74.3 64 57.8
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.6e-11 73.2 75 45.3
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 7.5e-11 71.6 108 44.4
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 9.8e-11 71.2 74 51.4
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 9.8e-11 71.2 67 50.7
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.3e-10 70.9 72 51.4
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.7e-10 70.5 104 39.4
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.2e-10 70.1 71 47.9
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.9e-10 69.7 80 46.2
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.9e-10 69.7 46 65.2
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.7e-10 69.3 66 53.0
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.9e-10 68.9 66 50.0
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.9e-10 68.9 66 50.0
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 4.9e-10 68.9 45 66.7
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 4.9e-10 68.9 69 53.6
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.9e-10 68.9 66 51.5
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 4.9e-10 68.9 46 67.4
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 6.4e-10 68.6 69 49.3
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.4e-10 68.6 65 52.3
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 8.3e-10 68.2 66 51.5
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 8.3e-10 68.2 46 65.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 8.3e-10 68.2 65 55.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 8.3e-10 68.2 45 64.4
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 8.3e-10 68.2 45 64.4
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.3e-10 68.2 46 65.2
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 8.3e-10 68.2 68 50.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.1e-09 67.8 68 52.9
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.1e-09 67.8 46 60.9
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.1e-09 67.8 69 46.4
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.1e-09 67.8 69 46.4
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.1e-09 67.8 46 65.2
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.4e-09 67.4 73 46.6
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.4e-09 67.4 46 65.2
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.4e-09 67.4 70 48.6
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.4e-09 67.4 69 52.2
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.9e-09 67.0 43 69.8
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 2.4e-09 66.6 46 65.2
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.4e-09 66.6 68 54.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.4e-09 66.6 65 50.8
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 2.4e-09 66.6 44 65.9
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.4e-09 66.6 64 51.6
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.4e-09 66.6 45 62.2
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.4e-09 66.6 45 68.9
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 3.2e-09 66.2 74 50.0
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 3.2e-09 66.2 55 54.5
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 4.1e-09 65.9 57 61.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.1e-09 65.9 55 56.4
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 5.4e-09 65.5 66 53.0
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 5.4e-09 65.5 71 45.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 5.4e-09 65.5 56 57.1
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.4e-09 65.5 69 52.2
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 5.4e-09 65.5 46 63.0
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 5.4e-09 65.5 66 47.0
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 5.4e-09 65.5 80 48.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 7.0e-09 65.1 71 47.9
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.2e-08 64.3 45 62.2
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.2e-08 64.3 71 47.9
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.2e-08 64.3 46 60.9
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.2e-08 64.3 68 45.6
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.2e-08 64.3 56 57.1
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.2e-08 64.3 40 70.0
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.2e-08 64.3 67 47.8
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.6e-08 63.9 74 47.3
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.6e-08 63.9 41 68.3
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.6e-08 63.9 43 65.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.0e-08 63.5 46 56.5
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 2.7e-08 63.2 71 52.1
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.7e-08 63.2 71 52.1
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 3.5e-08 62.8 46 54.3
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.5e-08 62.8 44 59.1
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 4.6e-08 62.4 67 49.3
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.6e-08 62.4 46 56.5
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 6.0e-08 62.0 56 55.4
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.8e-08 61.6 75 41.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 7.8e-08 61.6 46 56.5
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 7.8e-08 61.6 63 47.6
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.0e-07 61.2 45 68.9
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-07 60.8 68 50.0
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-07 60.8 46 63.0
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.7e-07 60.5 46 58.7
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.3e-07 60.1 61 50.8
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.3e-07 60.1 107 35.5
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.9e-07 59.3 106 33.0
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.9e-07 59.3 44 56.8
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.0e-07 58.9 68 48.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 5.0e-07 58.9 45 62.2
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.0e-07 58.9 45 62.2
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.0e-07 58.9 45 62.2
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.0e-07 58.9 84 42.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 8.6e-07 58.2 48 56.2
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.1e-06 57.8 46 54.3
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.9e-06 57.0 55 50.9
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 4.3e-06 55.8 46 56.5
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 5.6e-06 55.5 45 57.8
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 9.5e-06 54.7 81 42.0


User provided reference genes

Program Settings