Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006491 Vanilla planifolia HOM05D000100 ORTHO05D430598 1.7e-91 339.3 173 100.0
HPP92_004678 Vanilla planifolia HOM05D000100 ORTHO05D000052 1.7e-27 126.7 86 80.2
HPP92_009164 Vanilla planifolia HOM05D000100 ORTHO05D000052 4.5e-12 75.5 81 51.9
HPP92_003988 Vanilla planifolia HOM05D000100 ORTHO05D000052 1.5e-10 70.5 78 47.4
DCAR_005378 Daucus carota HOM05D000100 ORTHO05D000052 3.6e-09 65.9 114 36.8
Rhsim01G0137100 Rhododendron simsii HOM05D000100 ORTHO05D000052 3.6e-09 65.9 113 37.2
CSS0035013 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 6.1e-09 65.1 114 36.8
HPP92_006490 Vanilla planifolia HOM05D000100 ORTHO05D010509 8.0e-09 64.7 42 76.2
Actinidia10110 Actinidia chinensis HOM05D000100 ORTHO05D000052 1.0e-08 64.3 141 31.9
CSS0020911 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 1.8e-08 63.5 77 45.5
Hma1.2p1_1564F.1_g290915 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 1.8e-08 63.5 113 35.4
CSS0024764 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 2.3e-08 63.2 141 33.3
Potri.014G096100 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.3e-08 63.2 88 42.0
Rhsim01G0170700 Rhododendron simsii HOM05D000100 ORTHO05D000052 2.3e-08 63.2 77 44.2
CANSAT56G1033 Cannabis sativa HOM05D000100 ORTHO05D000052 4.0e-08 62.4 76 40.8
AUR62023486 Chenopodium quinoa HOM05D000100 ORTHO05D000052 4.0e-08 62.4 118 34.7
Lj7P502T18 Lonicera japonica HOM05D000100 ORTHO05D000052 4.0e-08 62.4 142 33.1
arahy.Tifrunner.gnm1.ann1.B60I9T Arachis hypogaea HOM05D000100 ORTHO05D000052 5.2e-08 62.0 114 33.3
CANSAT56G0774 Cannabis sativa HOM05D000100 ORTHO05D000052 5.2e-08 62.0 76 40.8
CANSAT56G3621 Cannabis sativa HOM05D000100 ORTHO05D000052 5.2e-08 62.0 143 31.5
Glyma.08G338600 Glycine max HOM05D000100 ORTHO05D000052 5.2e-08 62.0 78 44.9
MSTRG.17327 Avicennia marina HOM05D000100 ORTHO05D000052 6.8e-08 61.6 141 33.3
PGR031G2451 Punica granatum HOM05D000100 ORTHO05D000052 6.8e-08 61.6 77 42.9
HanXRQChr04g0120901 Helianthus annuus HOM05D000100 ORTHO05D000052 8.8e-08 61.2 145 31.0
CSS0002227 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 1.2e-07 60.8 113 36.3
Migut.N01561 Erythranthe guttata HOM05D000100 ORTHO05D000052 1.2e-07 60.8 83 42.2
Rhsim07G0033800 Rhododendron simsii HOM05D000100 ORTHO05D000052 1.2e-07 60.8 128 32.0
GSVIVG01009658001 Vitis vinifera HOM05D000100 ORTHO05D000052 1.2e-07 60.8 86 39.5
Ca_07375_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 1.5e-07 60.5 109 34.9
HanXRQChr04g0120721 Helianthus annuus HOM05D000100 ORTHO05D000052 1.5e-07 60.5 117 35.0
Nitab4.5_0000360g0020 Nicotiana tabacum HOM05D000100 ORTHO05D000052 1.5e-07 60.5 86 37.2
Thecc.03G294300 Theobroma cacao HOM05D000100 ORTHO05D000052 1.5e-07 60.5 121 34.7
CSS0034169 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 2.0e-07 60.1 128 32.0
CSS0041898 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 2.0e-07 60.1 143 31.5
CANSAT21G1107 Cannabis sativa HOM05D000100 ORTHO05D000052 2.0e-07 60.1 79 40.5
Migut.B01845 Erythranthe guttata HOM05D000100 ORTHO05D000052 2.0e-07 60.1 137 32.8
Lj7A541T80 Lonicera japonica HOM05D000100 ORTHO05D000052 2.0e-07 60.1 75 42.7
Lalb_Chr03g0040231 Lupinus albus HOM05D000100 ORTHO05D000052 2.0e-07 60.1 105 37.1
MBI07_g24341_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D000052 2.0e-07 60.1 78 38.5
Prupe.2G184800 Prunus persica HOM05D000100 ORTHO05D000052 2.0e-07 60.1 76 42.1
vmacro20861 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 2.0e-07 60.1 76 40.8
vmacro22509 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 2.0e-07 60.1 76 40.8
CARHR249220 Cardamine hirsuta HOM05D000100 ORTHO05D000052 2.6e-07 59.7 77 42.9
Ca_07388_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 2.6e-07 59.7 109 34.9
Lj1g0028203 Lotus japonicus HOM05D000100 ORTHO05D000052 2.6e-07 59.7 113 33.6
Rhsim07G0033700 Rhododendron simsii HOM05D000100 ORTHO05D000052 2.6e-07 59.7 113 34.5
HPP92_024022 Vanilla planifolia HOM05D000100 ORTHO05D000052 2.6e-07 59.7 104 36.5
arahy.Tifrunner.gnm1.ann1.QT2H54 Arachis hypogaea HOM05D000100 ORTHO05D000052 3.4e-07 59.3 114 32.5
BcaB01g02340 Brassica carinata HOM05D000100 ORTHO05D000052 3.4e-07 59.3 77 40.3
TWI59G0974 Tripterygium wilfordii HOM05D000100 ORTHO05D000052 3.4e-07 59.3 79 41.8
vmacro13476 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 3.4e-07 59.3 128 31.2
CSS0023704 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 4.4e-07 58.9 77 42.9
Migut.B01156 Erythranthe guttata HOM05D000100 ORTHO05D000052 4.4e-07 58.9 142 32.4
Hma1.2p1_1564F.1_g290940 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 4.4e-07 58.9 113 33.6
Nitab4.5_0009125g0020 Nicotiana tabacum HOM05D000100 ORTHO05D000052 4.4e-07 58.9 150 31.3
BcaB05g23966 Brassica carinata HOM05D000100 ORTHO05D000052 5.7e-07 58.5 125 35.2
C03p38850 Brassica napus HOM05D000100 ORTHO05D000052 5.7e-07 58.5 77 40.3
HanXRQChr04g0120911 Helianthus annuus HOM05D000100 ORTHO05D000052 5.7e-07 58.5 145 31.0
Phvul.006G111400 Phaseolus vulgaris HOM05D000100 ORTHO05D000052 5.7e-07 58.5 156 30.8
Sc01g0002880 Simmondsia chinensis HOM05D000100 ORTHO05D000052 5.7e-07 58.5 114 31.6
HPP92_020019 Vanilla planifolia HOM05D000100 ORTHO05D000052 5.7e-07 58.5 78 50.0
ATR0589G035 Amborella trichopoda HOM05D000100 ORTHO05D000052 7.5e-07 58.2 83 38.6
Migut.B01158 Erythranthe guttata HOM05D000100 ORTHO05D000052 7.5e-07 58.2 138 32.6
Migut.O00676 Erythranthe guttata HOM05D000100 ORTHO05D000052 7.5e-07 58.2 138 32.6
Lj3g0015275 Lotus japonicus HOM05D000100 ORTHO05D000052 7.5e-07 58.2 81 38.3
Lj3g0025912 Lotus japonicus HOM05D000100 ORTHO05D000052 7.5e-07 58.2 81 38.3
Sp6g01070 Schrenkiella parvula HOM05D000100 ORTHO05D000052 7.5e-07 58.2 126 31.7
THA.LOC104825873 Tarenaya hassleriana HOM05D000100 ORTHO05D000052 7.5e-07 58.2 78 38.5
VMungo0540G1697 Vigna mungo HOM05D000100 ORTHO05D000052 7.5e-07 58.2 143 30.8
Aa31LG5G880 Aethionema arabicum HOM05D000100 ORTHO05D000052 9.8e-07 57.8 90 37.8
AT1G10400 Arabidopsis thaliana HOM05D000090 ORTHO05D000083 9.8e-07 57.8 85 42.4
MSTRG.20891 Avicennia marina HOM05D000100 ORTHO05D000052 9.8e-07 57.8 77 44.2
CSS0007398 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 9.8e-07 57.8 113 33.6
Carub.0006s3613 Capsella rubella HOM05D000100 ORTHO05D000052 9.8e-07 57.8 92 35.9
Ca_07389_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 9.8e-07 57.8 109 34.9
Glyma.03G256500 Glycine max HOM05D000100 ORTHO05D000052 9.8e-07 57.8 141 31.9
Lalb_Chr03g0040191 Lupinus albus HOM05D000100 ORTHO05D000052 9.8e-07 57.8 105 34.3
Medtr8g008990 Medicago truncatula HOM05D000100 ORTHO05D000052 9.8e-07 57.8 113 32.7
SGA_v2.0_scaffold5G03000 Striga asiatica HOM05D000100 ORTHO05D000052 9.8e-07 57.8 137 32.1
HPP92_006487 Vanilla planifolia HOM05D000100 ORTHO05D000052 9.8e-07 57.8 123 36.6
Atru.chr5.638 Acer truncatum HOM05D000100 ORTHO05D000052 1.3e-06 57.4 145 29.7
BcaC01g06842 Brassica carinata HOM05D000100 ORTHO05D000052 1.3e-06 57.4 77 39.0
BcaC03g16068 Brassica carinata HOM05D000100 ORTHO05D000052 1.3e-06 57.4 125 34.4
A08p33990 Brassica napus HOM05D000090 ORTHO05D000083 1.3e-06 57.4 79 43.0
C02p38340 Brassica napus HOM05D000100 ORTHO05D000052 1.3e-06 57.4 125 34.4
C08p13680 Brassica napus HOM05D000090 ORTHO05D000083 1.3e-06 57.4 79 41.8
BolC2t09848H Brassica oleracea HOM05D000100 ORTHO05D000052 1.3e-06 57.4 125 34.4
BolC8t49005H Brassica oleracea HOM05D000090 ORTHO05D000083 1.3e-06 57.4 79 41.8
DCAR_025244 Daucus carota HOM05D000100 ORTHO05D000052 1.3e-06 57.4 114 34.2
Hma1.2p1_0938F.1_g239060 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 1.3e-06 57.4 122 33.6
Peaxi162Scf00843g00012 Petunia axillaris HOM05D000100 ORTHO05D000052 1.3e-06 57.4 113 34.5
Ca_27044_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 1.7e-06 57.0 141 29.1
Psat3g003800 Pisum sativum HOM05D000100 ORTHO05D000052 1.7e-06 57.0 141 31.2
Sp1g09010 Schrenkiella parvula HOM05D000090 ORTHO05D000083 1.7e-06 57.0 79 40.5
TPR.G39075 Trifolium pratense HOM05D000100 ORTHO05D000052 1.7e-06 57.0 105 35.2
vmacro13179 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 1.7e-06 57.0 77 42.9
vmacro22510 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 1.7e-06 57.0 79 39.2
AT4G01070 Arabidopsis thaliana HOM05D000100 ORTHO05D000052 2.2e-06 56.6 90 35.6
A03p31840 Brassica napus HOM05D000100 ORTHO05D000052 2.2e-06 56.6 77 39.0
Nitab4.5_0000305g0010 Nicotiana tabacum HOM05D000100 ORTHO05D000052 2.2e-06 56.6 113 34.5
TWI23G0411 Tripterygium wilfordii HOM05D000100 ORTHO05D000052 2.2e-06 56.6 143 30.1
vmacro20862 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 2.2e-06 56.6 77 39.0
vmacro22512 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 2.2e-06 56.6 77 39.0
GSVIVG01027064001 Vitis vinifera HOM05D000100 ORTHO05D000052 2.2e-06 56.6 85 36.5
AL1G21170 Arabidopsis lyrata HOM05D000090 ORTHO05D000083 2.8e-06 56.2 85 40.0
BraA08t35312Z Brassica rapa HOM05D000090 ORTHO05D000083 2.8e-06 56.2 79 41.8
CSS0007904 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 2.8e-06 56.2 129 31.0
Duzib068G0170 Durio zibethinus HOM05D000100 ORTHO05D000052 2.8e-06 56.2 117 35.9
Oeu007860.1 Olea europaea HOM05D000100 ORTHO05D000052 2.8e-06 56.2 78 42.3
PSO478G5189 Papaver somniferum HOM05D000100 ORTHO05D000052 2.8e-06 56.2 83 41.0
PSO513G0118 Papaver somniferum HOM05D000100 ORTHO05D000052 2.8e-06 56.2 78 34.6
Potri.003G138200 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.8e-06 56.2 117 33.3
ATR0589G061 Amborella trichopoda HOM05D000100 ORTHO05D000052 3.7e-06 55.8 76 43.4
FAN01G2765 Fragaria x ananassa HOM05D000100 ORTHO05D000052 3.7e-06 55.8 112 33.9
Rhsim07G0006000 Rhododendron simsii HOM05D000100 ORTHO05D000052 3.7e-06 55.8 77 40.3
CSS0018616 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 4.9e-06 55.5 113 36.3
CDE02G3800 Ceratophyllum demersum HOM05D000100 ORTHO05D000052 4.9e-06 55.5 107 29.0
Ciclev10019927m.g Citrus clementina HOM05D000100 ORTHO05D000052 4.9e-06 55.5 78 35.9
ECA236G0584 Erigeron canadensis HOM05D000100 ORTHO05D000052 4.9e-06 55.5 145 28.3
FvH4_7g16110 Fragaria vesca HOM05D000100 ORTHO05D000052 4.9e-06 55.5 112 33.9
Hma1.2p1_2345F.1_g320450 Hydrangea macrophylla HOM05D000100 ORTHO05D000052 4.9e-06 55.5 77 40.3
MBI06_g32752_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D000052 4.9e-06 55.5 76 34.2
Peaxi162Scf00403g00616 Petunia axillaris HOM05D000100 ORTHO05D000052 4.9e-06 55.5 78 41.0
arahy.Tifrunner.gnm1.ann1.AU62Q4 Arachis hypogaea HOM05D000100 ORTHO05D000052 6.3e-06 55.1 113 30.1
arahy.Tifrunner.gnm1.ann1.US1YZY Arachis hypogaea HOM05D000100 ORTHO05D000052 6.3e-06 55.1 113 30.1
A02p24330 Brassica napus HOM05D000100 ORTHO05D000052 6.3e-06 55.1 125 33.6
BraA02t07423Z Brassica rapa HOM05D000100 ORTHO05D000052 6.3e-06 55.1 125 33.6
CSS0044363 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 6.3e-06 55.1 113 34.5
CiPaw.01G073800 Carya illinoinensis HOM05D000100 ORTHO05D000052 6.3e-06 55.1 141 29.1
CiPaw.15G073800 Carya illinoinensis HOM05D000100 ORTHO05D000052 6.3e-06 55.1 146 30.8
Ciclev10015042m.g Citrus clementina HOM05D000100 ORTHO05D000052 6.3e-06 55.1 114 36.0
Gohir.A07G139000 Gossypium hirsutum HOM05D000100 ORTHO05D000052 6.3e-06 55.1 78 37.2
Psat3g069880 Pisum sativum HOM05D000090 ORTHO05D000083 6.3e-06 55.1 162 29.6
Potri.014G096000 Populus trichocarpa HOM05D000100 ORTHO05D000052 6.3e-06 55.1 114 33.3
RcHm_v2.0_Chr5g0073631 Rosa chinensis HOM05D000100 ORTHO05D000052 6.3e-06 55.1 114 35.1
BcaC07g38602 Brassica carinata HOM05D000090 ORTHO05D000083 8.3e-06 54.7 79 39.2
A09p00210 Brassica napus HOM05D000100 ORTHO05D000052 8.3e-06 54.7 141 31.2
CiPaw.01G055800 Carya illinoinensis HOM05D000100 ORTHO05D000052 8.3e-06 54.7 141 29.8
Duzib138G0689 Durio zibethinus HOM05D000100 ORTHO05D000052 8.3e-06 54.7 76 38.2
FvH4_7g16090 Fragaria vesca HOM05D000100 ORTHO05D000052 8.3e-06 54.7 104 34.6
FAN06G0590 Fragaria x ananassa HOM05D000100 ORTHO05D000052 8.3e-06 54.7 104 38.5
FAN10G1235 Fragaria x ananassa HOM05D000100 ORTHO05D000052 8.3e-06 54.7 104 34.6
Glyma.08G338200 Glycine max HOM05D000100 ORTHO05D000052 8.3e-06 54.7 109 35.8
HanXRQChr06g0170411 Helianthus annuus HOM05D000100 ORTHO05D000052 8.3e-06 54.7 145 29.0
Medtr7g117170 Medicago truncatula HOM05D000100 ORTHO05D000052 8.3e-06 54.7 141 30.5
Nitab4.5_0008990g0040 Nicotiana tabacum HOM05D000100 ORTHO05D000052 8.3e-06 54.7 117 33.3
Phvul.008G140700 Phaseolus vulgaris HOM05D000100 ORTHO05D000052 8.3e-06 54.7 78 39.7
Potri.002G168600 Populus trichocarpa HOM05D000100 ORTHO05D000052 8.3e-06 54.7 148 31.8
QL02p031249 Quercus lobata HOM05D000100 ORTHO05D000052 8.3e-06 54.7 120 35.0
QL04p030620 Quercus lobata HOM05D000100 ORTHO05D000052 8.3e-06 54.7 112 35.7
SHI08680 Sapria himalayana HOM05D000100 ORTHO05D000052 8.3e-06 54.7 131 31.3
THA.LOC104825872 Tarenaya hassleriana HOM05D000100 ORTHO05D000052 8.3e-06 54.7 78 35.9


User provided reference genes

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