Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 2228.8 1127 100.0
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 1449.9 1171 65.9
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 1436.0 1173 65.2
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 1427.2 1211 63.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1412.1 1171 64.6
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 1406.7 1181 64.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 1404.8 1174 64.1
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 1397.9 1175 64.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 1397.1 1173 64.3
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 1395.6 1172 64.1
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 1392.9 1175 64.3
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 1392.5 1173 64.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 1391.7 1170 63.8
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 1390.6 1172 63.1
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1390.2 1171 63.7
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 1388.6 1175 63.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 1386.7 1175 62.6
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 1386.3 1171 63.6
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 1386.3 1176 63.4
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 1381.7 1175 63.0
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 1380.9 1171 62.6
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 1380.5 1172 64.2
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 1380.5 1173 63.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 1380.5 1175 63.1
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1379.4 1174 63.4
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 1377.1 1171 63.0
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 1377.1 1174 63.3
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 1374.4 1172 63.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 1374.0 1175 62.4
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 1373.6 1176 62.5
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 1371.3 1175 62.3
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 1369.4 1177 63.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 1367.8 1179 63.0
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 1367.8 1175 62.0
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1365.1 1175 62.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 1362.8 1171 62.7
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 1360.9 1171 62.7
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 1359.7 1172 62.4
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 1359.4 1172 62.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 1359.4 1174 62.2
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 1355.5 1172 62.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 1349.3 1174 62.4
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 1346.3 1174 62.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 1344.3 1173 61.9
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 1340.1 1174 61.2
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 1337.4 1177 61.3
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 1336.2 1173 61.9
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 1331.2 1174 61.4
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 1319.7 1140 62.3
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 1318.1 1171 61.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 1312.0 1174 60.5
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 1305.8 1175 61.0
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 1293.1 1219 58.7
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 1287.7 1169 59.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 1284.2 1169 59.5
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 1276.9 1172 59.6
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 1270.0 1175 58.5
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 1264.2 1172 58.8
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 1261.9 1379 52.7
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 1257.3 1172 58.7
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 1257.3 1170 58.6
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 1256.9 1177 59.6
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 1256.5 1173 59.3
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 1255.7 1173 59.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 1172 58.8
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 1172 58.8
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 1172 58.8
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 1172 58.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 1248.0 1171 58.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1248.0 1178 58.2
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 1244.2 1172 58.4
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 1238.0 1171 58.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 1236.1 1174 57.6
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 1224.5 1175 57.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 1224.2 1104 61.3
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1209.1 1144 57.3
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1164.4 1212 54.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 1157.5 1170 55.9
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1125.2 1183 53.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 1109.4 1192 54.4
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1080.9 937 62.8
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 2.4e-295 1019.2 875 62.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-292 1010.4 846 64.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 1.4e-284 983.4 1204 47.5
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.2e-283 980.3 919 59.0
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.6e-278 962.6 963 57.1
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 4.2e-276 955.3 1151 48.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.2e-249 867.5 690 66.5
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 5.2e-234 815.5 1130 43.9
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.9e-232 808.9 610 69.7
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 3.2e-207 726.5 1188 39.1
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 1.1e-204 718.0 1247 37.9
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.3e-203 714.5 596 65.1
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.2e-198 698.0 628 60.2
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 7.9e-198 695.3 547 66.9
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 1.1e-196 691.4 675 56.9
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 7.2e-167 592.4 518 61.0
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 3.9e-165 586.6 704 48.6
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.5e-153 547.0 841 43.4
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 6.1e-150 536.2 486 59.1
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.3e-139 501.9 613 51.4
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.4e-123 446.4 450 55.6
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 7.9e-89 333.2 346 54.3
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-88 332.4 239 74.9
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.5e-84 318.9 334 54.8
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-81 309.3 328 54.0
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.9e-63 248.8 257 54.1
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-62 246.1 256 53.1
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.8e-62 244.2 205 65.4
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 6.1e-57 227.3 244 52.0
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.5e-55 222.6 252 51.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 7.4e-55 220.3 200 56.5
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 9.7e-55 219.9 208 55.3
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 3.6e-33 148.3 105 72.4
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.9e-26 125.9 707 25.9
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.9e-26 125.9 248 34.7
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.0e-24 120.2 149 43.0
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.4e-24 119.8 148 43.2
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 9.8e-23 113.6 117 59.0
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.8e-19 101.7 102 58.8
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.8e-19 101.7 102 58.8
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.0e-16 93.6 170 40.0
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 8.9e-16 90.5 143 44.1
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 2.2e-14 85.9 87 52.9
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.0e-11 77.0 77 50.6
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.3e-11 76.6 67 56.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.3e-11 76.6 67 56.7
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.3e-11 75.9 88 44.3
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.6e-10 71.2 131 44.3
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-09 68.9 65 63.1
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 3.6e-09 68.6 92 41.3
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 4.7e-09 68.2 271 29.5


User provided reference genes

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