Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 5.5e-95 350.9 171 100.0
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 2.9e-51 205.7 183 59.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 4.9e-51 204.9 180 61.7
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 6.4e-51 204.5 181 61.3
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 6.4e-51 204.5 151 66.2
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.9e-50 203.0 186 57.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.4e-50 202.6 179 57.5
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 4.1e-50 201.8 180 61.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 4.1e-50 201.8 179 58.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 4.1e-50 201.8 187 59.4
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 4.1e-50 201.8 148 64.2
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 5.4e-50 201.4 184 59.8
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.1e-50 201.1 158 61.4
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 9.2e-50 200.7 186 56.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 9.2e-50 200.7 183 56.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.2e-49 200.3 182 59.9
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.2e-49 200.3 178 60.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.2e-49 200.3 178 61.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-49 199.9 187 58.3
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.6e-49 199.9 180 61.1
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.1e-49 199.5 184 57.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.1e-49 199.5 163 60.1
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.7e-49 199.1 186 57.0
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.7e-49 199.1 179 57.0
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.7e-49 199.1 179 58.1
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.7e-49 199.1 179 57.0
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.7e-49 199.1 179 58.1
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 4.6e-49 198.4 175 58.9
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 4.6e-49 198.4 133 72.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 4.6e-49 198.4 131 74.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 6.0e-49 198.0 174 58.6
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.0e-49 198.0 179 57.0
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 6.0e-49 198.0 185 57.8
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 7.8e-49 197.6 185 57.8
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 7.8e-49 197.6 141 67.4
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.0e-48 197.2 183 57.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.0e-48 197.2 191 56.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.0e-48 197.2 129 69.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-48 196.1 175 58.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.3e-48 196.1 134 68.7
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.3e-48 196.1 133 71.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.3e-48 196.1 132 69.7
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.3e-48 196.1 160 63.1
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.0e-48 195.7 175 57.1
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.0e-48 195.7 185 55.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.9e-48 195.3 133 72.2
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 5.1e-48 194.9 178 57.3
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 5.1e-48 194.9 163 60.7
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 5.1e-48 194.9 132 67.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.6e-48 194.5 186 56.5
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 6.6e-48 194.5 130 71.5
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 8.6e-48 194.1 133 71.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 8.6e-48 194.1 140 65.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.6e-48 194.1 181 59.7
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.1e-47 193.7 151 63.6
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.1e-47 193.7 182 55.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-47 193.4 155 63.9
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-47 193.0 163 58.9
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.9e-47 193.0 163 58.9
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.5e-47 192.6 180 58.3
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.5e-47 192.6 180 58.3
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.3e-47 192.2 141 66.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.3e-47 192.2 131 67.9
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.3e-47 191.8 185 54.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.3e-47 191.8 133 68.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 4.3e-47 191.8 129 72.1
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.3e-47 191.8 134 64.9
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 4.3e-47 191.8 138 65.9
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 5.6e-47 191.4 132 65.2
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.6e-47 191.4 183 55.2
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.6e-47 191.4 155 58.7
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 5.6e-47 191.4 150 65.3
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 9.6e-47 190.7 131 68.7
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 9.6e-47 190.7 131 67.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 9.6e-47 190.7 179 54.7
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.6e-46 189.9 163 58.3
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.6e-46 188.7 181 55.8
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.7e-46 188.3 163 58.3
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.7e-46 188.3 130 67.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 4.7e-46 188.3 180 56.7
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 6.2e-46 188.0 173 56.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 6.2e-46 188.0 131 67.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 6.2e-46 188.0 163 57.1
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 6.2e-46 188.0 149 61.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.2e-46 188.0 131 67.9
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 6.2e-46 188.0 141 63.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 8.1e-46 187.6 133 68.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.1e-46 187.6 133 66.9
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.1e-46 187.6 163 61.3
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 8.1e-46 187.6 131 64.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.1e-46 187.6 181 58.0
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-45 187.2 132 68.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.4e-45 186.8 131 67.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.4e-45 186.8 138 64.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.8e-45 186.4 157 59.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.8e-45 186.4 152 62.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.8e-45 186.4 160 61.2
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.4e-45 186.0 166 54.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.1e-45 185.7 145 61.4
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 5.2e-45 184.9 157 56.1
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 8.9e-45 184.1 133 66.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.5e-44 183.3 182 57.7
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.0e-44 183.0 146 62.3
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.0e-44 183.0 183 52.5
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 3.4e-44 182.2 223 47.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.4e-44 182.2 184 56.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.4e-44 181.8 167 58.1
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 5.8e-44 181.4 140 64.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 5.8e-44 181.4 152 59.2
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.2e-43 179.5 162 58.6
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.4e-43 177.9 175 53.7
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.1e-42 177.2 131 64.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.4e-42 176.8 182 53.8
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.9e-42 176.4 159 59.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.9e-42 176.4 129 64.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 9.3e-42 174.1 115 70.4
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.7e-41 172.6 160 54.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.5e-41 172.2 116 69.8
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.7e-40 169.9 246 41.9
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.3e-40 169.5 197 47.7
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.9e-40 168.7 159 57.2
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.6e-38 163.3 125 58.4
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-37 160.6 270 38.5
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 5.8e-36 154.8 124 57.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 8.4e-35 151.0 119 59.7
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 9.3e-34 147.5 125 56.0
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 5.3e-29 131.7 131 50.4
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.3e-29 131.7 91 70.3
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-27 126.7 114 60.5
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 8.4e-27 124.4 138 49.3
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.4e-26 123.6 88 65.9
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.8e-24 116.7 79 65.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 5.6e-23 111.7 73 69.9
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.6e-23 111.7 72 65.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.1e-22 109.8 73 68.5
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.2e-22 108.2 131 53.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.3e-19 100.5 102 43.1
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 4.2e-18 95.5 138 34.8
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 4.6e-17 92.0 66 63.6
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.1e-15 87.4 59 64.4
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.5e-15 86.3 102 50.0
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 9.3e-10 67.8 83 55.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.1e-07 60.8 64 50.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 4.3e-07 58.9 35 65.7


User provided reference genes

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