Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 5.5e-212 740.7 377 100.0
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.2e-113 414.1 310 65.8
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 7.1e-111 404.8 307 65.8
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.7e-110 402.9 307 66.1
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 3.5e-110 402.5 308 66.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 4.6e-110 402.1 309 65.7
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.0e-109 401.0 308 65.6
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.7e-109 400.2 312 61.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.9e-109 399.1 307 64.2
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.9e-109 399.1 307 64.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 8.7e-109 397.9 310 63.5
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.9e-108 396.7 313 64.2
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 5.6e-108 395.2 310 63.2
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 5.6e-108 395.2 310 63.2
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.3e-107 394.0 310 63.2
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.6e-107 393.7 322 62.4
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 6.2e-107 391.7 310 61.9
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 6.2e-107 391.7 311 63.7
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 6.2e-107 391.7 310 62.9
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 8.1e-107 391.3 310 62.3
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 8.1e-107 391.3 310 63.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.1e-106 391.0 311 64.0
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.8e-106 390.2 311 64.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.0e-106 389.0 309 63.4
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 9.0e-106 387.9 307 63.2
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.2e-105 387.5 350 58.0
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 5.8e-105 385.2 306 62.7
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 2.2e-104 383.3 309 63.1
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.2e-104 383.3 310 60.3
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.2e-104 383.3 311 63.3
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.9e-104 382.9 310 61.9
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 3.8e-104 382.5 321 61.4
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.1e-103 380.9 310 60.6
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.4e-103 380.6 307 63.2
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.4e-103 380.6 307 62.5
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 2.4e-103 379.8 307 61.9
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.2e-103 379.4 310 59.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.2e-103 379.0 307 63.2
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 5.5e-103 378.6 307 59.6
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 7.1e-103 378.3 322 58.4
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 7.1e-103 378.3 274 66.1
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.2e-102 377.5 307 61.2
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.1e-102 376.7 310 61.6
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 3.5e-102 375.9 307 62.9
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 5.1e-101 372.1 307 59.0
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 6.7e-101 371.7 309 61.2
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 4.3e-100 369.0 307 60.3
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-99 367.5 307 58.3
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.3e-99 367.5 274 64.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.6e-99 367.1 282 63.1
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 3.7e-99 365.9 307 60.9
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 3.7e-99 365.9 334 55.1
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 4.8e-99 365.5 308 60.1
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.1e-99 364.8 310 59.4
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.1e-99 364.8 310 59.4
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 8.1e-99 364.8 294 63.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 8.1e-99 364.8 311 60.5
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.8e-98 363.6 307 59.3
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.8e-98 363.6 334 54.8
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 3.1e-98 362.8 307 60.3
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.0e-98 362.5 310 59.4
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 4.0e-98 362.5 309 58.6
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.5e-97 360.5 307 59.3
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.6e-97 359.8 322 56.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.7e-96 357.1 307 58.0
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 3.8e-96 355.9 307 58.0
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 4.9e-96 355.5 307 57.3
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 8.4e-96 354.8 263 65.0
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.9e-95 353.6 311 58.8
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.5e-95 353.2 317 57.4
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 4.6e-94 349.0 269 63.9
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 4.6e-94 349.0 268 62.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 6.0e-94 348.6 269 63.2
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.0e-93 347.8 312 57.7
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.0e-93 346.3 309 56.6
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 3.9e-93 345.9 272 60.3
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 6.7e-93 345.1 307 58.3
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.1e-92 344.4 271 60.5
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 2.8e-91 339.7 307 56.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.1e-90 337.8 311 54.7
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.8e-90 337.0 307 56.4
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 6.9e-90 335.1 247 68.0
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.2e-89 334.3 307 54.7
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.2e-89 334.3 307 55.7
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 5.9e-89 332.0 322 53.4
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.7e-88 330.5 247 68.0
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 3.8e-88 329.3 270 59.6
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 1.1e-87 327.8 270 57.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 1.1e-87 327.8 238 70.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 3.2e-87 326.2 308 54.9
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.2e-86 324.3 250 60.8
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.6e-86 322.8 308 54.5
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.6e-86 322.8 308 55.2
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-85 321.2 283 58.3
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 3.9e-85 319.3 308 54.2
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 6.7e-85 318.5 308 54.2
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 8.7e-85 318.2 308 53.9
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-84 316.2 308 53.9
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-84 316.2 308 53.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 4.3e-84 315.8 308 53.9
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 4.3e-84 315.8 308 53.9
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 7.4e-84 315.1 308 53.6
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.3e-83 314.3 308 53.6
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.8e-83 313.2 309 52.8
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.7e-83 312.8 308 52.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 3.7e-83 312.8 308 52.9
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 6.3e-83 312.0 308 53.6
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 6.3e-83 312.0 308 53.6
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.1e-82 311.2 307 54.4
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.4e-82 310.8 308 52.9
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.2e-81 307.8 257 61.9
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.3e-80 304.3 291 53.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.5e-79 300.1 272 57.4
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.1e-76 291.2 253 59.3
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.3e-76 289.7 273 54.6
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.1e-74 284.6 214 64.5
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.2e-73 281.2 314 48.1
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.4e-73 279.6 287 51.6
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 5.5e-71 272.3 211 64.0
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.0e-69 268.1 330 44.8
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.6e-65 254.2 320 46.2
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.0e-65 253.8 320 43.4
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.1e-46 189.1 195 48.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 3.4e-44 183.3 276 41.7
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.4e-44 183.3 177 53.7
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.0e-41 174.1 142 59.9
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.6e-38 164.5 195 48.2
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.4e-34 151.4 109 63.3
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 3.2e-26 123.6 113 54.9
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 3.9e-24 116.7 120 49.2
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 9.9e-12 75.5 241 29.9
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.3e-08 65.1 66 59.1


User provided reference genes

Program Settings