Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.3e-32 142.5 73 100.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.3e-21 105.9 74 74.3
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.8e-21 104.4 73 69.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 5.0e-21 104.0 73 69.9
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 8.6e-21 103.2 73 71.2
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 8.6e-21 103.2 74 75.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.5e-20 102.4 75 74.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.3e-20 101.3 73 68.5
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.3e-20 101.3 73 68.5
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.3e-20 101.3 73 68.5
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.3e-20 101.3 74 70.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 4.2e-20 100.9 73 67.1
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 5.5e-20 100.5 73 65.8
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.2e-20 100.1 73 67.1
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 9.5e-20 99.8 73 68.5
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.2e-19 99.4 73 68.5
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.6e-19 99.0 73 64.4
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.1e-19 98.6 75 68.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 2.1e-19 98.6 73 64.4
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 68.5
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 65.8
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 65.8
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 3.6e-19 97.8 74 70.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.6e-19 97.8 74 70.3
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 3.6e-19 97.8 75 68.0
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 4.7e-19 97.4 73 63.0
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.1e-19 97.1 74 66.2
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.0e-19 96.7 61 72.1
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.0e-18 96.3 74 64.9
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-18 95.9 74 66.2
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 73 64.4
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.3e-18 95.1 74 64.9
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.3e-18 95.1 74 64.9
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.0e-18 94.7 71 66.2
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.0e-18 94.7 74 64.9
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.0e-18 94.7 75 62.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.0e-18 94.7 74 66.2
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 5.2e-18 94.0 73 61.6
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.9e-18 93.2 73 64.4
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 8.9e-18 93.2 73 58.9
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 8.9e-18 93.2 74 63.5
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.0e-17 92.0 73 61.6
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 2.0e-17 92.0 73 64.4
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.4e-17 90.9 68 67.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 4.4e-17 90.9 75 64.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 5.7e-17 90.5 75 64.0
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.5e-17 90.1 73 61.6
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.5e-17 90.1 73 61.6
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-16 89.4 66 62.1
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.3e-16 89.4 74 64.9
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-16 89.4 73 64.4
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.7e-16 89.0 79 68.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 2.2e-16 88.6 66 63.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.2e-16 88.6 73 64.4
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.8e-16 88.2 66 66.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 2.8e-16 88.2 74 63.5
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.7e-16 87.8 66 60.6
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 3.7e-16 87.8 64 65.6
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 4.9e-16 87.4 66 59.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.3e-16 87.0 68 64.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.3e-16 86.7 73 58.9
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.1e-15 86.3 71 62.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.4e-15 85.9 74 59.5
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.4e-15 85.9 73 60.3
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.4e-15 85.9 79 63.3
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 78 60.3
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 78 60.3
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.8e-15 85.5 80 61.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.4e-15 85.1 78 59.0
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.4e-15 85.1 78 61.5
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.4e-15 85.1 78 61.5
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 3.2e-15 84.7 64 67.2
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 3.2e-15 84.7 73 56.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 4.1e-15 84.3 78 60.3
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.4e-15 84.0 71 62.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.4e-15 84.0 78 57.7
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.4e-15 84.0 71 62.0
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 7.0e-15 83.6 66 59.1
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.0e-15 83.6 73 61.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 9.2e-15 83.2 66 59.1
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 9.2e-15 83.2 64 65.6
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 9.2e-15 83.2 64 65.6
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 9.2e-15 83.2 64 65.6
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 9.2e-15 83.2 64 65.6
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 9.2e-15 83.2 64 65.6
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 69 62.3
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-14 82.8 66 63.6
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.2e-14 82.8 71 59.2
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.6e-14 82.4 73 60.3
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.6e-14 82.4 59 62.7
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 69 62.3
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.0e-14 82.0 66 62.1
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.0e-14 82.0 66 62.1
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.0e-14 82.0 78 57.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.7e-14 81.6 66 63.6
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.5e-14 81.3 79 57.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 4.6e-14 80.9 59 64.4
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 4.6e-14 80.9 66 60.6
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.6e-14 80.9 79 59.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 7.8e-14 80.1 61 65.6
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 7.8e-14 80.1 61 65.6
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-13 79.7 66 56.1
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.7e-13 79.0 61 63.9
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-13 78.2 45 73.3
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 2.9e-13 78.2 80 53.8
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.9e-13 78.2 68 58.8
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.9e-13 78.2 45 75.6
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.9e-13 78.2 79 57.0
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.9e-13 78.2 79 57.0
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.9e-13 77.8 81 55.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.9e-13 77.8 44 75.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 5.0e-13 77.4 74 54.1
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.0e-13 77.4 77 57.1
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 6.6e-13 77.0 62 56.5
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 6.6e-13 77.0 65 60.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 6.6e-13 77.0 47 76.6
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 6.6e-13 77.0 53 64.2
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 8.6e-13 76.6 60 65.0
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-12 76.3 64 62.5
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.5e-12 75.9 47 74.5
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.5e-12 75.9 42 71.4
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.9e-12 75.5 49 65.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-12 75.1 45 71.1
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.5e-12 75.1 72 56.9
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.5e-12 75.1 47 68.1
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 3.3e-12 74.7 80 55.0
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.3e-12 74.3 47 68.1
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 4.3e-12 74.3 79 54.4
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 5.6e-12 73.9 72 58.3
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.6e-12 73.9 71 54.9
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 7.3e-12 73.6 75 53.3
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 9.5e-12 73.2 78 53.8
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.2e-11 72.8 53 58.5
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.6e-11 72.4 50 62.0
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-10 69.7 60 56.7
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.4e-10 69.3 51 54.9
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-10 68.2 75 53.3
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-10 68.2 75 53.3
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-10 68.2 75 53.3
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-10 68.2 75 53.3
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.1e-10 68.2 75 53.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.1e-10 68.2 71 47.9
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 4.0e-10 67.8 73 50.7
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 4.0e-10 67.8 75 52.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 6.8e-10 67.0 72 50.0
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 8.9e-10 66.6 63 58.7
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.5e-09 65.9 55 56.4
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.5e-09 65.9 57 57.9
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.7e-08 62.4 54 57.4
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.7e-08 62.4 56 58.9
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.7e-08 61.2 35 74.3
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.7e-06 55.1 42 61.9


User provided reference genes

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