Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 5.4e-69 264.2 136 100.0
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 1.1e-42 176.8 128 72.7
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.5e-42 176.4 110 80.0
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 4.3e-42 174.9 115 77.4
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.3e-41 173.3 110 80.0
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.8e-41 172.2 133 68.4
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 8.1e-41 170.6 136 66.9
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 3.1e-40 168.7 128 68.8
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 4.0e-40 168.3 129 70.5
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 5.3e-40 167.9 129 69.8
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 5.3e-40 167.9 129 65.9
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 6.9e-40 167.5 106 79.2
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 6.9e-40 167.5 110 80.9
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 9.0e-40 167.2 110 80.0
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 9.0e-40 167.2 115 75.7
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.5e-39 166.4 108 80.6
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 1.5e-39 166.4 135 68.9
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 2.0e-39 166.0 110 80.0
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 2.6e-39 165.6 128 68.8
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 4.5e-39 164.9 115 74.8
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 4.5e-39 164.9 129 67.4
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 7.6e-39 164.1 128 65.6
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 7.6e-39 164.1 110 78.2
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 7.6e-39 164.1 110 79.1
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 9.9e-39 163.7 114 75.4
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 9.9e-39 163.7 110 79.1
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.3e-38 163.3 128 67.2
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.7e-38 162.9 110 75.5
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 1.7e-38 162.9 110 76.4
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 2.2e-38 162.5 128 65.6
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.2e-38 162.5 110 78.2
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 2.9e-38 162.2 112 75.0
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.9e-38 161.4 110 78.2
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 4.9e-38 161.4 103 78.6
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 8.4e-38 160.6 112 74.1
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.1e-37 160.2 128 68.0
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 1.1e-37 160.2 126 65.1
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.9e-37 159.5 129 65.9
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.9e-37 159.5 110 72.7
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 2.4e-37 159.1 126 69.0
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 2.4e-37 159.1 115 73.0
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 4.2e-37 158.3 127 67.7
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.2e-37 158.3 117 72.6
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.2e-37 158.3 117 72.6
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 5.5e-37 157.9 106 76.4
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 5.5e-37 157.9 110 74.5
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.5e-37 157.9 117 72.6
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.5e-37 157.9 117 72.6
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.5e-37 157.9 117 72.6
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 5.5e-37 157.9 110 76.4
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.5e-37 157.9 112 72.3
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 5.5e-37 157.9 103 77.7
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 7.1e-37 157.5 112 73.2
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 7.1e-37 157.5 112 72.3
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.2e-36 156.8 106 74.5
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.2e-36 156.8 117 71.8
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 1.6e-36 156.4 103 73.8
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 1.6e-36 156.4 109 76.1
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 2.1e-36 156.0 110 73.6
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 2.1e-36 156.0 110 71.8
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 2.1e-36 156.0 110 71.8
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 2.7e-36 155.6 106 78.3
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.6e-36 154.8 110 75.5
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 6.0e-36 154.5 102 78.4
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 6.0e-36 154.5 129 65.1
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 6.0e-36 154.5 106 72.6
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 7.9e-36 154.1 110 70.0
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.9e-36 154.1 106 77.4
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 7.9e-36 154.1 110 71.8
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 1.3e-35 153.3 123 67.5
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.3e-35 153.3 106 74.5
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.8e-35 152.9 129 65.1
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.8e-35 152.9 129 65.1
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 1.8e-35 152.9 110 72.7
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 3.0e-35 152.1 104 74.0
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 3.0e-35 152.1 114 68.4
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 3.9e-35 151.8 110 70.0
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.9e-35 151.8 106 76.4
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 3.9e-35 151.8 110 73.6
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 5.1e-35 151.4 115 71.3
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 5.1e-35 151.4 115 71.3
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 6.7e-35 151.0 111 73.9
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.7e-35 151.0 111 73.9
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 8.7e-35 150.6 110 72.7
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 1.5e-34 149.8 112 69.6
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 1.5e-34 149.8 110 70.9
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 1.9e-34 149.4 110 72.7
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 2.5e-34 149.1 106 73.6
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.3e-34 148.7 112 68.8
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.3e-34 148.7 110 69.1
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 3.3e-34 148.7 127 63.8
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 4.3e-34 148.3 110 70.0
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 7.4e-34 147.5 134 60.4
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 7.4e-34 147.5 110 68.2
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.3e-33 146.7 110 69.1
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.6e-33 146.4 110 70.0
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.6e-33 146.4 110 70.0
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.6e-33 146.4 110 70.0
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.6e-33 146.4 110 70.0
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 2.1e-33 146.0 129 62.8
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 3.7e-33 145.2 106 70.8
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 8.2e-33 144.1 112 67.9
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.4e-32 143.3 127 62.2
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 2.4e-32 142.5 129 60.5
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.0e-32 141.7 99 75.8
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.3e-32 141.4 92 73.9
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 2.0e-31 139.4 128 60.2
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 4.5e-31 138.3 110 64.5
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 1.0e-30 137.1 111 68.5
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 1.3e-30 136.7 92 71.7
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 2.2e-30 136.0 127 63.8
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.9e-30 135.6 123 58.5
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 1.1e-29 133.7 92 69.6
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 1.4e-29 133.3 128 59.4
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 2.5e-29 132.5 103 68.0
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.2e-28 130.2 100 66.0
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 1.2e-28 130.2 107 59.8
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 4.6e-28 128.3 112 61.6
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 7.9e-28 127.5 110 61.8
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 1.0e-27 127.1 116 61.2
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.0e-27 125.6 108 60.2
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 3.0e-27 125.6 102 68.6
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.7e-26 121.3 99 66.7
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.3e-25 120.2 108 61.1
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 4.8e-25 118.2 93 63.4
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.4e-23 112.1 96 67.7
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.4e-21 106.7 68 82.4
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 6.7e-19 97.8 126 50.0
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.5e-18 96.7 92 55.4
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.8e-17 92.4 57 75.4
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 8.2e-17 90.9 107 47.7
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.4e-16 90.1 126 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 2.2e-14 82.8 125 42.4
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.5e-13 79.3 49 75.5
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 7.2e-13 77.8 64 70.3
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 1.3e-09 67.0 93 46.2
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 4.8e-09 65.1 133 34.6
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.4e-08 62.8 93 44.1
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 5.3e-08 61.6 106 38.7


User provided reference genes

Program Settings