Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1265.4 627 100.0
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1175.6 641 92.5
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 8.1e-277 956.8 614 75.7
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 2.3e-276 955.3 614 76.4
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 4.0e-276 954.5 614 75.6
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 3.7e-274 948.0 609 75.5
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 2.1e-272 942.2 615 74.8
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 4.6e-272 941.0 614 74.9
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 6.0e-272 940.6 608 74.2
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 3.0e-271 938.3 608 74.0
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 1.9e-270 935.6 615 73.2
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 3.3e-270 934.9 608 74.8
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 7.3e-270 933.7 609 74.4
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 2.8e-269 931.8 609 74.2
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 8.1e-269 930.2 614 73.8
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 3.1e-268 928.3 608 74.0
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 2.6e-267 925.2 609 73.4
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 3.4e-267 924.9 599 75.3
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 5.8e-267 924.1 609 73.4
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 5.8e-267 924.1 608 73.2
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 2.2e-266 922.2 609 72.4
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 2.2e-266 922.2 604 72.8
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 3.8e-266 921.4 603 73.5
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.1e-265 919.8 614 73.5
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.1e-265 919.8 614 73.5
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 1.1e-265 919.8 604 72.8
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.9e-265 919.1 604 72.2
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 4.2e-265 917.9 614 72.5
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 4.2e-265 917.9 609 73.1
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 7.1e-265 917.1 614 72.8
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 9.2e-265 916.8 616 72.4
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 1.2e-264 916.4 597 74.7
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 2.1e-264 915.6 609 73.2
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 2.7e-264 915.2 597 74.2
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 3.5e-264 914.8 615 72.7
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 4.6e-264 914.4 604 71.9
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 1.3e-263 912.9 604 73.2
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 5.1e-263 911.0 624 71.6
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 2.5e-262 908.7 614 70.8
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.3e-262 908.3 595 72.6
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 3.6e-261 904.8 603 72.6
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 6.2e-261 904.0 603 72.6
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 8.1e-261 903.7 604 72.5
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.4e-260 902.1 599 72.5
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 2.4e-260 902.1 614 70.8
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 3.1e-260 901.7 594 73.4
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 9.0e-260 900.2 599 73.0
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 9.0e-260 900.2 599 72.5
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 1.5e-259 899.4 599 72.3
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 2.0e-259 899.0 608 70.9
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 2.6e-259 898.7 615 70.7
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 3.4e-259 898.3 605 72.2
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 9.9e-259 896.7 605 71.6
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 6.4e-258 894.0 656 67.5
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 1.9e-257 892.5 605 71.9
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 2.4e-257 892.1 600 71.0
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 2.4e-257 892.1 614 70.4
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 3.2e-257 891.7 611 71.0
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 3.2e-257 891.7 614 70.5
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 4.2e-257 891.3 614 70.7
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 1.6e-256 889.4 605 71.7
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 1.6e-256 889.4 625 69.1
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 3.9e-255 884.8 614 69.5
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 6.6e-255 884.0 614 70.2
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 1.5e-254 882.9 600 71.3
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 1.5e-254 882.9 600 71.3
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 1.9e-254 882.5 600 71.7
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 1.9e-254 882.5 600 71.7
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 1.9e-254 882.5 600 71.3
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 5.6e-254 880.9 615 69.9
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 7.3e-254 880.6 600 71.5
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 9.6e-254 880.2 601 69.7
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 1.4e-252 876.3 595 70.8
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 1.2e-251 873.2 616 69.8
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 1.5e-251 872.8 600 70.8
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 2.6e-251 872.1 599 71.0
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 2.6e-251 872.1 602 70.4
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 4.5e-251 871.3 600 70.5
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 5.8e-251 870.9 600 70.5
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 5.8e-251 870.9 601 69.6
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 7.6e-251 870.5 597 71.4
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 2.2e-250 869.0 600 70.3
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 2.2e-250 869.0 600 70.5
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 2.2e-250 869.0 600 70.5
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 6.4e-250 867.5 602 70.3
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 1.9e-249 865.9 601 69.1
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 7.1e-249 864.0 613 68.7
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 2.1e-248 862.4 600 69.8
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.0e-247 860.1 607 70.5
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 1.5e-246 856.3 614 68.6
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 3.7e-245 851.7 622 67.7
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 4.8e-245 851.3 640 66.6
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 2.9e-242 842.0 614 66.4
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 3.5e-240 835.1 617 67.7
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 6.7e-239 830.9 609 67.7
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 5.8e-235 817.8 600 66.5
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 3.0e-231 805.4 599 67.1
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 1.7e-221 773.1 657 61.9
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 5.3e-220 768.1 604 63.9
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 4.8e-213 745.0 617 60.3
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 1.7e-210 736.5 639 59.5
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.7e-205 719.9 601 60.6
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 1.2e-203 713.8 692 54.6
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 5.4e-196 688.3 470 70.2
CDE05G0336 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.0e-187 659.8 415 76.9
arahy.Tifrunner.gnm1.ann1.ZBDE9H Arachis hypogaea HOM05D003435 ORTHO05D004032 8.0e-184 647.9 401 78.6
Hund13567 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.8e-180 636.7 401 75.6
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 2.3e-178 629.8 592 53.5
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 6.6e-178 628.2 592 52.5
VMungo0251G2917 Vigna mungo HOM05D003435 ORTHO05D004032 1.9e-169 600.1 382 77.2
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 1.6e-168 597.0 600 52.7
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.3e-167 593.2 434 66.4
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 4.0e-167 592.4 434 66.4
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 3.7e-165 585.9 599 51.3
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 1.9e-161 573.5 632 47.5
QL06p042317 Quercus lobata HOM05D003435 ORTHO05D004032 3.3e-161 572.8 334 82.9
VMungo1215G0393 Vigna mungo HOM05D003435 ORTHO05D004032 7.6e-150 535.0 334 76.0
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 6.9e-143 511.9 373 67.0
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.5e-124 450.3 608 42.6
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.0e-118 430.6 312 67.3
CDE05G2519 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.3e-114 417.9 240 82.1
Pp3c11_22390 Physcomitrium patens HOM05D000091 ORTHO05D004032 1.1e-111 408.3 411 50.1
Pp3c7_4380 Physcomitrium patens HOM05D000091 ORTHO05D004032 1.8e-111 407.5 411 50.6
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 6.7e-106 389.0 619 38.0
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 1.8e-103 380.9 279 64.9
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 1.0e-98 365.2 673 35.8
Hma1.2p1_1744F.1_g300230 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 7.0e-95 352.4 320 59.1
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 9.4e-84 315.5 206 75.7
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 3.2e-76 290.4 202 69.3
Gorai.007G210900 Gossypium raimondii HOM05D003435 ORTHO05D004032 1.5e-73 281.6 171 77.8
Gohir.D11G197000 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.2e-72 277.7 171 76.6
Gohir.A11G190301 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.8e-72 277.3 171 76.0
Cpa.g.sc6.380 Carica papaya HOM05D003435 ORTHO05D004032 4.1e-71 273.5 204 68.1
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 7.8e-62 242.7 189 59.8
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 7.8e-62 242.7 194 59.3
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 1.3e-61 241.9 194 58.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 8.6e-61 239.2 171 72.5
SMO304G0043 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 6.2e-59 233.0 422 35.5
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 2.6e-57 227.6 185 57.3
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 3.2e-55 220.7 186 57.5
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 2.7e-46 191.0 221 47.1
Rhsim03G0142900 Rhododendron simsii HOM05D000230 ORTHO05D000176 4.7e-43 180.3 115 75.7
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 1.4e-42 178.7 173 50.3
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 1.7e-40 171.8 163 50.3
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 2.9e-40 171.0 181 54.7
Hma1.2p1_0979F.1_g243630 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 4.6e-30 137.1 90 65.6
Hma1.2p1_1179F.1_g264490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 4.6e-30 137.1 90 65.6
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 2.5e-20 104.8 99 49.5
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.5e-20 104.8 60 81.7
Peaxi162Scf00691g00516 Petunia axillaris HOM05D003435 ORTHO05D004032 4.8e-19 100.5 59 79.7
Duzib187G1677 Durio zibethinus HOM05D003435 ORTHO05D004032 1.8e-18 98.6 69 66.7
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 3.1e-18 97.8 59 74.6
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 6.7e-13 80.1 45 77.8
SHI22841 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-09 68.6 57 70.2
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 4.5e-09 67.4 70 47.1
SMO014G0036 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 1.4e-07 62.4 46 56.5


User provided reference genes

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