Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 7.6e-228 793.5 401 100.0
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.7e-108 396.4 307 64.5
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 6.6e-107 391.7 331 61.0
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 8.6e-107 391.3 324 61.7
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.5e-106 390.6 329 60.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 5.6e-106 388.7 309 63.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-105 387.1 324 61.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.8e-105 386.3 320 61.2
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.6e-105 386.0 324 60.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.7e-105 385.6 331 60.7
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.7e-105 385.6 332 59.3
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 6.2e-105 385.2 333 59.5
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 8.1e-105 384.8 324 60.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 6.9e-104 381.7 328 60.7
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 8.9e-104 381.3 331 58.6
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.0e-103 380.2 324 60.2
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 2.0e-103 380.2 331 58.6
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.4e-103 379.4 308 62.0
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 3.4e-103 379.4 318 61.9
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.8e-103 378.6 324 61.1
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.8e-103 378.6 324 60.5
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 9.9e-103 377.9 312 60.9
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 9.9e-103 377.9 305 64.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.3e-102 377.5 325 59.1
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.3e-102 377.5 324 59.6
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.7e-102 377.1 313 62.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.2e-102 376.7 324 59.9
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.4e-102 375.2 333 60.4
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 8.4e-102 374.8 324 59.6
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.4e-101 373.2 311 62.4
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.2e-101 372.9 324 59.0
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.2e-101 372.9 325 59.1
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 5.4e-101 372.1 307 62.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 5.4e-101 372.1 322 59.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 9.3e-101 371.3 315 60.0
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.2e-100 370.9 309 60.8
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.2e-100 370.9 326 57.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.1e-100 370.2 338 56.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.1e-100 370.2 324 58.6
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.1e-100 370.2 328 57.0
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.1e-100 370.2 308 61.4
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.1e-100 370.2 313 60.4
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.1e-100 370.2 306 62.7
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 4.6e-100 369.0 309 59.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 4.6e-100 369.0 323 59.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.6e-100 369.0 321 59.8
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.0e-99 367.9 324 60.2
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.3e-99 367.5 325 59.4
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.7e-99 367.1 323 57.3
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 2.3e-99 366.7 333 56.5
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.0e-99 366.3 323 58.5
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.9e-99 365.9 306 62.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 6.6e-99 365.2 308 61.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 6.6e-99 365.2 324 59.6
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 8.7e-99 364.8 308 61.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 8.7e-99 364.8 304 61.5
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 3.3e-98 362.8 324 58.0
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 7.3e-98 361.7 320 58.8
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 9.6e-98 361.3 319 58.6
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.6e-97 360.5 315 59.0
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.8e-97 359.8 315 60.0
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.8e-97 359.8 308 59.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.8e-97 359.8 332 57.2
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.6e-97 359.4 324 57.7
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-96 357.8 316 59.8
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.1e-96 357.8 272 65.8
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-96 357.5 346 56.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.8e-96 357.1 308 59.1
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.1e-96 356.3 353 55.0
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.1e-96 356.3 352 55.4
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.1e-96 356.3 325 56.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 3.1e-96 356.3 324 55.6
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 3.1e-96 356.3 318 58.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.0e-96 355.9 324 56.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 4.0e-96 355.9 324 56.2
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 6.9e-96 355.1 325 57.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.2e-95 354.4 317 56.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.2e-95 354.4 361 52.6
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 4.5e-95 352.4 308 57.5
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 4.5e-95 352.4 324 57.1
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 7.6e-95 351.7 327 56.9
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 7.6e-95 351.7 305 60.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 9.9e-95 351.3 325 57.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.7e-94 350.5 308 58.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.9e-94 349.7 268 66.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.9e-94 349.7 324 54.9
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 3.8e-94 349.4 317 57.1
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 4.9e-94 349.0 323 57.0
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 6.4e-94 348.6 352 54.0
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 8.4e-94 348.2 324 56.8
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.4e-94 348.2 392 50.3
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-93 347.8 350 53.4
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.4e-93 347.4 308 58.1
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.9e-93 347.1 318 57.2
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 3.2e-93 346.3 324 55.9
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 4.2e-93 345.9 308 57.5
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 5.4e-93 345.5 327 56.0
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.1e-92 343.6 317 56.5
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 6.0e-92 342.0 317 56.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.8e-91 340.5 308 57.5
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.0e-91 339.7 268 63.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.5e-90 337.4 334 53.6
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.9e-90 337.0 294 58.5
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.6e-90 335.5 275 61.8
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 7.4e-90 335.1 328 54.6
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-89 334.3 268 61.9
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-88 330.9 268 61.6
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-88 330.9 277 60.3
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 6.9e-88 328.6 369 49.6
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.2e-87 327.8 331 53.8
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.2e-87 327.8 266 63.5
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.8e-86 322.8 308 53.2
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-85 318.9 328 53.7
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.5e-85 318.9 309 55.0
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.5e-84 316.2 324 53.1
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 6.0e-84 315.5 327 52.9
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 2.3e-83 313.5 247 63.2
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.1e-83 312.4 332 50.9
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 5.6e-82 308.9 248 62.5
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.8e-81 306.6 273 58.6
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 5.5e-77 292.4 310 50.3
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-69 268.1 229 59.4
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.8e-67 260.8 233 56.2
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.3e-67 260.4 327 45.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.3e-65 254.6 308 49.4
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.5e-63 247.7 308 46.8
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.4e-63 246.5 199 62.3
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 5.9e-63 245.7 313 44.7
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 7.4e-58 228.8 453 37.1
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.4e-56 223.8 293 44.7
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 5.9e-55 219.2 271 47.2
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.7e-54 217.6 158 65.2
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.2e-54 217.2 189 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.9e-53 214.2 199 54.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.5e-53 213.8 353 39.4
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.6e-52 211.1 212 53.8
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 6.1e-52 209.1 313 41.5
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 3.0e-51 206.8 180 58.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 3.9e-51 206.5 172 61.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.4e-50 203.0 182 57.1
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.4e-50 202.2 248 49.6
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.7e-49 201.1 181 57.5
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.5e-45 187.2 224 44.2
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 5.5e-45 186.0 172 56.4
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.6e-44 184.5 264 43.2
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.7e-41 174.5 217 47.9
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.2e-41 174.1 149 60.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 4.5e-39 166.4 137 58.4
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 4.5e-39 166.4 142 62.0
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 6.5e-38 162.5 221 43.9
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 5.5e-37 159.5 152 55.3
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 4.7e-36 156.4 135 57.8
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-35 154.8 119 61.3
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.3e-35 154.1 197 45.2
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-35 153.7 117 62.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 2.0e-34 151.0 171 42.7
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.4e-34 149.8 176 46.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.2e-33 147.5 152 50.7
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-27 128.6 145 48.3
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 8.8e-27 125.6 106 63.2
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 5.6e-21 106.3 115 49.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 7.3e-21 105.9 116 52.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.0e-19 102.1 129 44.2
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-17 95.1 56 76.8
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-11 75.1 97 44.3
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 4.4e-10 70.1 93 45.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 2.2e-09 67.8 79 43.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 4.9e-09 66.6 79 43.0
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 1.9e-08 64.7 74 47.3
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.6e-07 61.6 42 76.2
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-06 58.9 40 67.5


User provided reference genes

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