Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.7e-175 617.5 309 100.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 3.0e-139 498.8 309 80.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.3e-136 489.2 309 76.7
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 5.2e-136 488.0 309 77.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 1.2e-135 486.9 309 76.4
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 2.0e-135 486.1 309 75.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 5.8e-135 484.6 309 76.1
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.6e-135 484.2 309 75.1
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 7.6e-135 484.2 309 75.7
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 1.1e-133 480.3 309 75.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 1.9e-133 479.6 309 76.4
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 9.2e-133 477.2 309 73.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 1.2e-132 476.9 309 74.1
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 2.1e-132 476.1 309 74.4
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 2.1e-132 476.1 309 76.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 2.7e-132 475.7 309 73.5
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 2.7e-132 475.7 306 73.9
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 3.5e-132 475.3 309 73.8
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 4.6e-132 474.9 310 75.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 4.6e-132 474.9 310 74.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 6.0e-132 474.6 309 74.4
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 6.0e-132 474.6 310 74.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 6.0e-132 474.6 309 74.4
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 6.0e-132 474.6 309 74.1
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 7.8e-132 474.2 309 73.8
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.3e-131 473.4 309 74.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 1.3e-131 473.4 309 75.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 1.3e-131 473.4 309 74.1
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 1.7e-131 473.0 308 75.0
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 3.0e-131 472.2 309 73.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 3.9e-131 471.9 309 73.8
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 3.9e-131 471.9 310 73.9
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 3.9e-131 471.9 309 73.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 6.6e-131 471.1 309 73.5
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 6.6e-131 471.1 309 73.8
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 8.6e-131 470.7 309 73.5
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 8.6e-131 470.7 309 74.1
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 8.6e-131 470.7 309 72.2
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.1e-130 470.3 309 72.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 1.1e-130 470.3 310 73.5
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 1.5e-130 469.9 309 75.1
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 2.5e-130 469.2 309 73.5
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 2.5e-130 469.2 309 74.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 2.5e-130 469.2 309 73.8
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 3.3e-130 468.8 309 73.5
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.3e-130 468.8 309 71.8
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 4.3e-130 468.4 309 72.5
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 9.6e-130 467.2 309 73.5
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 9.6e-130 467.2 309 73.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 1.2e-129 466.8 309 73.5
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 1.2e-129 466.8 309 73.5
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 1.2e-129 466.8 309 73.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 1.2e-129 466.8 309 73.8
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 1.6e-129 466.5 309 71.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 1.6e-129 466.5 309 73.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 2.1e-129 466.1 309 72.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 2.1e-129 466.1 309 72.5
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.1e-129 466.1 309 73.8
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.8e-129 465.7 309 72.8
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 4.7e-129 464.9 309 72.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 8.1e-129 464.2 309 72.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 8.1e-129 464.2 309 72.5
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 1.1e-128 463.8 309 72.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 1.1e-128 463.8 309 71.8
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 1.1e-128 463.8 309 71.8
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 1.1e-128 463.8 309 72.8
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 1.4e-128 463.4 309 72.2
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 1.4e-128 463.4 306 71.6
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 1.4e-128 463.4 309 71.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 3.1e-128 462.2 309 72.5
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 4.0e-128 461.8 309 71.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 4.0e-128 461.8 309 71.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 6.8e-128 461.1 309 71.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 1.2e-127 460.3 309 71.5
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 1.5e-127 459.9 309 71.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 1.5e-127 459.9 309 71.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 5.8e-127 458.0 309 71.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 5.8e-127 458.0 309 72.2
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 9.9e-127 457.2 309 70.9
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 1.3e-126 456.8 309 71.2
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 1.3e-126 456.8 309 70.9
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 1.3e-126 456.8 309 70.6
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 1.3e-126 456.8 309 71.2
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 2.9e-126 455.7 309 71.2
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 3.8e-126 455.3 309 71.2
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 3.8e-126 455.3 309 73.1
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 4.9e-126 454.9 308 70.8
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 4.9e-126 454.9 309 72.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 4.9e-126 454.9 309 71.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 6.4e-126 454.5 309 70.9
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 8.4e-126 454.1 309 70.6
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 8.4e-126 454.1 309 70.6
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 1.1e-125 453.8 309 71.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.4e-125 453.4 305 71.5
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 1.4e-125 453.4 309 70.6
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 1.4e-125 453.4 309 71.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 1.9e-125 453.0 309 70.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 2.4e-125 452.6 309 71.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 3.2e-125 452.2 309 70.2
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 1.6e-124 449.9 309 69.9
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 1.6e-124 449.9 309 69.9
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.6e-124 449.9 337 65.6
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 2.7e-124 449.1 309 69.9
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 2.7e-124 449.1 318 68.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 6.6e-123 444.5 308 69.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 1.1e-122 443.7 309 70.2
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 2.5e-122 442.6 302 72.8
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.3e-122 441.0 301 70.4
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 1.3e-121 440.3 308 69.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.1e-120 437.2 309 68.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 1.4e-120 436.8 309 67.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 6.9e-120 434.5 309 68.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.3e-115 420.2 309 64.1
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 3.3e-114 415.6 309 64.4
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 1.3e-113 413.7 307 65.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.0e-112 408.7 309 63.8
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 6.9e-112 407.9 309 62.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 2.2e-110 402.9 267 73.8
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 1.1e-109 400.6 267 73.4
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 3.2e-109 399.1 309 66.3
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 9.3e-109 397.5 309 65.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 6.0e-108 394.8 309 65.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.9e-108 394.4 309 64.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 6.7e-107 391.3 309 60.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-104 384.0 309 65.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.2e-101 372.1 309 59.5
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 5.1e-99 365.2 276 64.1
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 6.9e-96 354.8 314 56.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.0e-94 350.9 320 55.0
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 2.5e-93 346.3 237 67.9
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.2e-93 344.7 309 55.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 9.3e-93 344.4 226 73.5
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 7.9e-92 341.3 307 57.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.0e-91 339.3 297 55.6
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 7.9e-84 314.7 300 53.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 4.3e-82 308.9 295 54.6
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.2e-70 270.0 312 42.9
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-55 220.3 183 61.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.1e-53 214.5 320 37.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-45 186.8 312 40.4
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 6.1e-44 182.2 124 75.8
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.6e-42 176.8 176 49.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.0e-34 150.6 149 53.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 7.5e-34 148.7 113 55.8
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.4e-27 127.9 105 56.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.0e-26 124.0 60 100.0
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 5.8e-26 122.5 274 28.8
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.4e-16 89.4 298 26.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.0e-14 85.1 206 26.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-13 80.9 256 26.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 3.3e-13 80.1 264 24.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.6e-13 79.3 83 51.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.1e-11 75.1 305 23.3
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.6e-10 70.5 51 62.7
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 9.9e-10 68.6 164 25.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 9.9e-10 68.6 43 69.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 5.4e-08 62.8 32 90.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 8.7e-06 55.5 79 41.8


User provided reference genes

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