Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005965 Vanilla planifolia HOM05D000141 ORTHO05D004993 3.7e-302 1040.8 549 100.0
MBI02_g32604_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004993 6.3e-233 810.8 562 77.8
Aqoxy6G01438 Aquilegia oxysepala HOM05D000141 ORTHO05D004993 1.1e-232 810.1 553 77.9
vmacro13004 Vaccinium macrocarpon HOM05D000141 ORTHO05D004993 4.5e-231 804.7 552 77.9
Rhsim10G0172400 Rhododendron simsii HOM05D000141 ORTHO05D004993 5.9e-231 804.3 553 77.8
Eucgr.I00545 Eucalyptus grandis HOM05D000141 ORTHO05D004993 1.2e-228 796.6 549 77.6
TAR376G1001 Trochodendron aralioides HOM05D000141 ORTHO05D004993 1.0e-227 793.5 553 77.0
Zm00001eb372980 Zea mays HOM05D000141 ORTHO05D004993 2.3e-227 792.3 549 75.2
Hund14088 Selenicereus undatus HOM05D000141 ORTHO05D004993 5.1e-227 791.2 549 76.3
PSO675G5554 Papaver somniferum HOM05D000141 ORTHO05D004993 6.7e-227 790.8 557 75.4
ATR0665G420 Amborella trichopoda HOM05D000141 ORTHO05D004993 2.8e-225 785.4 548 76.6
TWI77G1015 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 3.7e-225 785.0 556 75.7
AUR62003657 Chenopodium quinoa HOM05D000141 ORTHO05D004993 1.1e-224 783.5 551 75.5
Potri.007G010700 Populus trichocarpa HOM05D000141 ORTHO05D004993 4.5e-223 778.1 553 75.2
PGR031G3531 Punica granatum HOM05D000141 ORTHO05D004993 5.9e-223 777.7 551 75.3
TWI74G0717 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 7.7e-223 777.3 556 75.0
EL10Ac6g15211 Beta vulgaris HOM05D000141 ORTHO05D004993 1.0e-222 776.9 551 74.8
Migut.K00793 Erythranthe guttata HOM05D000141 ORTHO05D004993 1.0e-222 776.9 553 74.9
AUR62017965 Chenopodium quinoa HOM05D000141 ORTHO05D004993 2.2e-222 775.8 551 74.8
Thecc.01G091400 Theobroma cacao HOM05D000141 ORTHO05D004993 3.8e-222 775.0 558 74.7
Cpa.g.sc55.32 Carica papaya HOM05D000141 ORTHO05D004993 6.5e-222 774.2 556 74.6
PSO541G3987 Papaver somniferum HOM05D000141 ORTHO05D004993 1.9e-221 772.7 557 74.0
Atru.chr3.1257 Acer truncatum HOM05D000141 ORTHO05D004993 2.5e-221 772.3 553 75.4
Ciclev10024724m.g Citrus clementina HOM05D000141 ORTHO05D004993 2.5e-221 772.3 552 73.7
Manes.12G126900 Manihot esculenta HOM05D000141 ORTHO05D004993 2.5e-221 772.3 552 74.5
Prupe.6G198800 Prunus persica HOM05D000141 ORTHO05D004993 2.5e-221 772.3 552 74.3
CSS0021935 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 2.1e-220 769.2 551 75.7
SGA_v2.0_scaffold45G17236 Striga asiatica HOM05D000141 ORTHO05D004993 2.7e-220 768.8 550 74.5
Phvul.003G289200 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 3.6e-220 768.5 553 74.7
ClCG01G018390 Citrullus lanatus HOM05D000141 ORTHO05D004993 1.4e-219 766.5 552 74.5
TPR.G14602 Trifolium pratense HOM05D000141 ORTHO05D004993 2.3e-219 765.8 556 74.1
CiPaw.07G048100 Carya illinoinensis HOM05D000141 ORTHO05D004993 3.0e-219 765.4 552 74.5
CDE10G0963 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 3.0e-219 765.4 552 73.6
VMungo0251G3517 Vigna mungo HOM05D000141 ORTHO05D004993 3.0e-219 765.4 553 74.3
Medtr8g471180 Medicago truncatula HOM05D000141 ORTHO05D004993 3.9e-219 765.0 553 74.5
MELO3C007717.2 Cucumis melo HOM05D000141 ORTHO05D004993 5.1e-219 764.6 552 74.6
CsaV3_6G045040 Cucumis sativus L. HOM05D000141 ORTHO05D004993 5.1e-219 764.6 552 74.6
Gohir.A11G206600 Gossypium hirsutum HOM05D000141 ORTHO05D004993 5.1e-219 764.6 557 74.3
Gorai.007G233100 Gossypium raimondii HOM05D000141 ORTHO05D004993 5.7e-218 761.1 553 74.3
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 7.4e-218 760.8 544 75.0
Duzib147G0545 Durio zibethinus HOM05D000141 ORTHO05D004993 9.7e-218 760.4 553 74.7
Cfa006890 Carpinus fangiana HOM05D000141 ORTHO05D004993 1.3e-217 760.0 547 74.8
Lj4g0027101 Lotus japonicus HOM05D000141 ORTHO05D004993 2.2e-217 759.2 551 74.6
MD00G1019700 Malus domestica HOM05D000141 ORTHO05D004993 2.2e-217 759.2 552 73.7
COL.COLO4_27349 Corchorus olitorius HOM05D000141 ORTHO05D004993 6.3e-217 757.7 555 74.1
Peaxi162Scf00778g00009 Petunia axillaris HOM05D000141 ORTHO05D004993 8.2e-217 757.3 552 74.3
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 1.4e-216 756.5 551 73.5
Ca_22599_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004993 2.4e-216 755.7 552 73.9
MSTRG.15690 Avicennia marina HOM05D000141 ORTHO05D004993 3.1e-216 755.4 553 73.4
FvH4_1g19720 Fragaria vesca HOM05D000141 ORTHO05D004993 5.3e-216 754.6 553 74.0
Sed0001145 Sechium edule HOM05D000141 ORTHO05D004993 5.3e-216 754.6 552 73.6
FAN26G1575 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.5e-215 753.1 552 73.7
Glyma.18G146600 Glycine max HOM05D000141 ORTHO05D004993 1.5e-215 753.1 552 73.2
RcHm_v2.0_Chr2g0111301 Rosa chinensis HOM05D000141 ORTHO05D004993 3.4e-215 751.9 553 73.8
FAN19G2112 Fragaria x ananassa HOM05D000141 ORTHO05D004993 5.9e-215 751.1 553 73.8
Phvul.002G147700 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 5.9e-215 751.1 556 72.7
FAN28G0107 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.3e-214 750.0 552 73.6
CANSAT54G0158 Cannabis sativa HOM05D000141 ORTHO05D004993 2.9e-214 748.8 552 73.2
SalBow5G1291 Salvia bowleyana HOM05D000141 ORTHO05D004993 3.8e-214 748.4 580 70.0
CAN.G1344.1 Capsicum annuum HOM05D000141 ORTHO05D004993 5.0e-214 748.0 551 72.6
arahy.Tifrunner.gnm1.ann1.029WE6 Arachis hypogaea HOM05D000141 ORTHO05D004993 1.1e-213 746.9 553 72.9
arahy.Tifrunner.gnm1.ann1.46GERB Arachis hypogaea HOM05D000141 ORTHO05D004993 1.4e-213 746.5 553 72.5
Ah.03g140120 Amaranthus hybridus HOM05D000141 ORTHO05D004993 3.2e-213 745.3 607 67.9
Sabra07G0008100 Salix brachista HOM05D000141 ORTHO05D004993 5.5e-213 744.6 637 65.9
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 7.2e-213 744.2 529 75.8
Glyma.01G023600 Glycine max HOM05D000141 ORTHO05D004993 9.4e-213 743.8 556 71.9
Glyma.02G041400 Glycine max HOM05D000141 ORTHO05D004993 1.2e-212 743.4 556 72.1
Glyma.08G279800 Glycine max HOM05D000141 ORTHO05D004993 1.2e-212 743.4 553 72.5
Lsat_1_v5_gn_3_61481 Lactuca sativa HOM05D000141 ORTHO05D004993 2.1e-212 742.7 550 72.4
Solyc11g010560.3 Solanum lycopersicum HOM05D000141 ORTHO05D004993 6.1e-212 741.1 553 71.6
Dinv13609 Davidia involucrata HOM05D000141 ORTHO05D004993 8.0e-212 740.7 551 72.8
CDE10G0717 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 1.0e-211 740.3 552 72.5
THA.LOC104801691 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 1.4e-211 740.0 552 73.0
Lalb_Chr05g0216301 Lupinus albus HOM05D000141 ORTHO05D004993 6.7e-211 737.6 553 71.1
Sopen11g005360 Solanum pennellii HOM05D000141 ORTHO05D004993 3.3e-210 735.3 553 71.2
Actinidia25312 Actinidia chinensis HOM05D000141 ORTHO05D004993 5.7e-210 734.6 553 72.9
Lalb_Chr05g0228501 Lupinus albus HOM05D000141 ORTHO05D004993 9.7e-210 733.8 554 71.1
A06p32290 Brassica napus HOM05D000141 ORTHO05D004993 2.2e-209 732.6 552 72.3
BraA06t26155Z Brassica rapa HOM05D000141 ORTHO05D004993 2.2e-209 732.6 552 72.3
C03p60620 Brassica napus HOM05D000141 ORTHO05D004993 3.7e-209 731.9 550 72.2
AL6G20990 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 4.8e-209 731.5 555 71.0
Sp2g28540 Schrenkiella parvula HOM05D000141 ORTHO05D004993 4.8e-209 731.5 552 72.3
AT5G65460 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 1.8e-208 729.6 552 72.3
Carub.0006s0895 Capsella rubella HOM05D000141 ORTHO05D004993 2.4e-208 729.2 555 70.5
Carub.0008s2631 Capsella rubella HOM05D000141 ORTHO05D004993 2.4e-208 729.2 552 71.7
AL8G43040 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 5.3e-208 728.0 550 72.2
AT5G10470 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 7.0e-208 727.6 555 70.5
Thhalv10012459m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 7.0e-208 727.6 556 70.3
arahy.Tifrunner.gnm1.ann1.52WN7P Arachis hypogaea HOM05D000141 ORTHO05D004993 1.6e-207 726.5 547 71.3
arahy.Tifrunner.gnm1.ann1.5SKZ26 Arachis hypogaea HOM05D000141 ORTHO05D004993 1.6e-207 726.5 547 71.3
HanXRQChr13g0405071 Helianthus annuus HOM05D000141 ORTHO05D004993 2.6e-207 725.7 549 71.8
Aa31LG1G16550 Aethionema arabicum HOM05D000141 ORTHO05D004993 4.5e-207 724.9 550 71.8
BolC3t18317H Brassica oleracea HOM05D000141 ORTHO05D004993 7.7e-207 724.2 550 71.6
BcaB01g06283 Brassica carinata HOM05D000141 ORTHO05D004993 5.0e-206 721.5 552 69.7
THA.LOC104819293 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 8.5e-206 720.7 564 70.6
Sp6g32970 Schrenkiella parvula HOM05D000141 ORTHO05D004993 1.9e-205 719.5 552 70.7
BcaB01g05532 Brassica carinata HOM05D000141 ORTHO05D004993 5.5e-205 718.0 552 69.4
C03p05120 Brassica napus HOM05D000141 ORTHO05D004993 5.5e-205 718.0 552 69.4
A03p04560 Brassica napus HOM05D000141 ORTHO05D004993 1.2e-204 716.8 552 69.2
BraA03t09798Z Brassica rapa HOM05D000141 ORTHO05D004993 6.1e-204 714.5 552 68.8
CARHR279440 Cardamine hirsuta HOM05D000141 ORTHO05D004993 4.0e-203 711.8 549 70.3
CARHR202820 Cardamine hirsuta HOM05D000141 ORTHO05D004993 2.0e-202 709.5 555 69.2
DCAR_003449 Daucus carota HOM05D000141 ORTHO05D004993 3.3e-202 708.8 552 68.7
Aa31LG3G16690 Aethionema arabicum HOM05D000141 ORTHO05D004993 2.0e-199 699.5 554 68.6
Psat4g119320 Pisum sativum HOM05D000141 ORTHO05D004993 1.5e-197 693.3 549 70.3
CSS0023880 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 6.1e-196 688.0 503 74.6
unitig_748.g7037 Utricularia gibba HOM05D000141 ORTHO05D004993 1.4e-195 686.8 540 69.4
Lj2C535G3 Lonicera japonica HOM05D000141 ORTHO05D004993 2.8e-193 679.1 491 74.5
unitig_0.g1718 Utricularia gibba HOM05D000141 ORTHO05D004993 1.6e-191 673.3 489 73.8
Eucgr.I00476 Eucalyptus grandis HOM05D000141 ORTHO05D004993 4.2e-189 665.2 551 68.6
DCAR_016619 Daucus carota HOM05D000141 ORTHO05D004993 5.4e-184 648.3 551 63.9
SEGI_00023 Sequoiadendron giganteum HOM05D000141 ORTHO05D004993 1.3e-182 643.7 525 65.9
SMO169G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 2.5e-173 612.8 560 59.5
AagrBONN_evm.TU.Sc2ySwM_228.4409 Anthoceros agrestis HOM05D000141 ORTHO05D004993 8.0e-172 607.8 554 61.0
SMO337G0058 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 2.3e-171 606.3 567 60.0
Gohir.D11G217000 Gossypium hirsutum HOM05D000141 ORTHO05D004993 2.8e-164 582.8 410 76.6
Dinv36920 Davidia involucrata HOM05D000141 ORTHO05D004993 7.5e-162 574.7 394 78.7
FAN23G0308 Fragaria x ananassa HOM05D000404 ORTHO05D004993 2.2e-161 573.2 411 75.4
Pp3c4_24010 Physcomitrium patens HOM05D000141 ORTHO05D004993 2.2e-161 573.2 575 56.2
FAN23G1526 Fragaria x ananassa HOM05D000141 ORTHO05D004993 2.9e-161 572.8 409 75.8
Pp3c3_10920 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.7e-158 563.5 570 55.8
Pp3c3_10921 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.7e-158 563.5 570 55.8
Mapoly0022s0156 Marchantia polymorpha HOM05D000141 ORTHO05D004993 1.1e-157 560.8 564 56.9
Nitab4.5_0025132g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004993 9.6e-149 531.2 390 72.3
TAR628G0162 Trochodendron aralioides HOM05D000141 ORTHO05D004993 6.9e-139 498.4 310 84.2
GSVIVG01005935001 Vitis vinifera HOM05D000141 ORTHO05D004993 1.2e-127 461.1 276 85.1
Thhalv10003525m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 1.0e-121 441.4 309 76.1
VMungo1215G2324 Vigna mungo HOM05D000141 ORTHO05D004993 1.8e-115 420.6 276 79.0
Haze_03862 Corylus avellana HOM05D000141 ORTHO05D004993 2.2e-113 413.7 276 77.5
CBR_g78819 Chara braunii HOM05D000141 ORTHO05D004993 2.3e-102 377.1 588 40.6
Haze_03861 Corylus avellana HOM05D000141 ORTHO05D004993 1.9e-96 357.5 277 71.5
GSVIVG01006736001 Vitis vinifera HOM05D000141 ORTHO05D004993 2.5e-96 357.1 277 71.5
Oeu012465.2 Olea europaea HOM05D000141 ORTHO05D004993 2.2e-92 344.0 287 66.2
VMungo1215G0183 Vigna mungo HOM05D000141 ORTHO05D004993 1.3e-89 334.7 281 66.2
MD15G1313400 Malus domestica HOM05D000141 ORTHO05D004993 1.6e-82 311.2 215 76.7
Os06g0217600 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004993 3.4e-77 293.5 238 62.6
Nitab4.5_0004153g0030 Nicotiana tabacum HOM05D000141 ORTHO05D004993 8.9e-62 242.3 159 79.9
Nitab4.5_0001468g0110 Nicotiana tabacum HOM05D000141 ORTHO05D004993 9.8e-61 238.8 159 78.6
Psat0s1531g0080 Pisum sativum HOM05D000141 ORTHO05D017607 9.5e-48 195.7 353 41.4
Dinv36919 Davidia involucrata HOM05D000141 ORTHO05D004993 2.3e-46 191.0 134 72.4
MD15G1313600 Malus domestica HOM05D000141 ORTHO05D004993 4.1e-43 180.3 115 75.7
PGSC0003DMG400031414 Solanum tuberosum HOM05D000141 ORTHO05D004993 7.1e-43 179.5 114 79.8
QL10p044591 Quercus lobata HOM05D006593 ORTHO05D004993 9.2e-43 179.1 146 65.8
QL10p045557 Quercus lobata HOM05D000141 ORTHO05D004993 2.1e-42 177.9 146 65.8
Psat6g213040 Pisum sativum HOM05D000141 ORTHO05D004993 4.7e-39 166.8 107 81.3
Psat0ss29278g0040 Pisum sativum HOM05D000141 ORTHO05D004993 1.1e-38 165.6 164 58.5
Psat0ss29278g0080 Pisum sativum HOM05D000141 ORTHO05D004993 1.2e-37 162.2 164 57.9
MD15G1313500 Malus domestica HOM05D000141 ORTHO05D017607 5.8e-37 159.8 119 72.3
TPR.G36254 Trifolium pratense HOM05D000141 ORTHO05D004993 6.4e-36 156.4 96 86.5
CBR_g8597 Chara braunii HOM05D000141 ORTHO05D004993 9.3e-35 152.5 277 38.6
SHI12213 Sapria himalayana HOM05D000141 ORTHO05D004993 3.6e-31 140.6 133 57.9
Lsat_1_v5_gn_1_89581 Lactuca sativa HOM05D000041 ORTHO05D000452 1.2e-29 135.6 115 60.0
COL.COLO4_22337 Corchorus olitorius HOM05D000141 ORTHO05D004993 4.8e-23 113.6 105 60.0
Eucgr.J00708 Eucalyptus grandis HOM05D000329 ORTHO05D045324 1.0e-17 95.9 62 83.9
Eucgr.J00931 Eucalyptus grandis HOM05D000329 ORTHO05D045324 3.3e-16 90.9 60 83.3
Lj2A535G40 Lonicera japonica HOM05D000141 ORTHO05D004993 2.4e-14 84.7 52 82.7
BolC6t38880H Brassica oleracea HOM05D000141 ORTHO05D017607 1.4e-11 75.5 62 66.1
BcaC08g45984 Brassica carinata HOM05D000141 ORTHO05D017607 3.0e-09 67.8 57 66.7
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 6.7e-09 66.6 50 68.0
CAN.G1724.1 Capsicum annuum HOM05D000141 ORTHO05D004993 1.5e-08 65.5 52 61.5
C06p37770 Brassica napus HOM05D000141 ORTHO05D017607 4.8e-07 60.5 54 64.8
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 4.8e-07 60.5 66 53.0
C03p78970 Brassica napus HOM05D000141 ORTHO05D017607 6.3e-07 60.1 213 31.5
A04p04820 Brassica napus HOM05D000141 ORTHO05D017607 1.8e-06 58.5 52 65.4
A09p34930 Brassica napus HOM05D000141 ORTHO05D017607 1.8e-06 58.5 52 65.4
A09p55270 Brassica napus HOM05D000141 ORTHO05D017607 1.8e-06 58.5 52 65.4
MBI15_g27814_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D001420 6.9e-06 56.6 34 85.3


User provided reference genes

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