Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 0.0e+00 1364.4 672 100.0
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 1.4e-194 683.7 461 71.6
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 7.7e-193 677.9 498 67.3
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 6.6e-192 674.9 542 63.7
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 3.3e-191 672.5 553 62.2
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 4.3e-191 672.2 669 55.2
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 9.5e-191 671.0 608 57.7
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 4.7e-190 668.7 503 66.0
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 9.8e-188 661.0 461 69.0
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 1.8e-186 656.8 455 69.7
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 4.3e-183 645.6 663 54.1
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 1.2e-182 644.0 450 69.1
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.4e-180 636.0 456 68.0
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 1.9e-178 630.2 694 53.7
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 3.2e-178 629.4 472 64.2
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 4.6e-177 625.5 529 61.4
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 1.0e-176 624.4 676 51.3
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 5.0e-176 622.1 463 65.2
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 1.1e-175 620.9 622 55.3
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 3.3e-175 619.4 627 55.2
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 4.3e-175 619.0 661 52.3
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 1.6e-174 617.1 661 52.8
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 3.6e-174 615.9 461 65.1
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 4.7e-174 615.5 453 67.5
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 1.1e-173 614.4 511 61.4
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 1.8e-173 613.6 504 61.7
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 2.3e-173 613.2 477 64.2
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 3.7e-171 605.9 433 68.4
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 3.2e-170 602.8 478 62.1
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 5.4e-170 602.1 427 67.7
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 1.6e-169 600.5 427 67.7
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.1e-169 600.1 454 65.2
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 2.1e-169 600.1 666 51.7
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 2.7e-169 599.7 478 62.6
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 2.7e-169 599.7 531 57.6
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.0e-168 597.8 518 59.5
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.7e-168 597.0 542 58.9
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 3.0e-168 596.3 485 61.2
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 3.0e-168 596.3 623 53.3
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 3.9e-168 595.9 668 50.9
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 3.9e-168 595.9 532 58.6
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 1.1e-167 594.3 502 60.4
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 1.1e-167 594.3 511 59.3
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.9e-167 593.6 468 63.7
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 1.9e-167 593.6 552 56.7
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 7.3e-167 591.7 464 62.3
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 9.5e-167 591.3 512 59.0
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 3.6e-166 589.3 536 56.7
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 8.9e-165 584.7 410 67.6
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 1.1e-162 577.8 463 62.6
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 1.1e-162 577.8 517 59.2
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 2.7e-161 573.2 471 59.9
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 4.6e-161 572.4 419 64.9
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 1.1e-159 567.8 662 50.3
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.5e-159 567.4 446 64.3
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 4.0e-157 559.3 443 62.5
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 3.5e-153 546.2 462 58.9
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.7e-152 543.9 492 58.1
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 1.5e-151 540.8 417 62.8
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 1.9e-151 540.4 456 59.2
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 3.3e-151 539.7 442 59.7
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 9.6e-151 538.1 507 55.8
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 1.6e-150 537.3 508 55.5
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 1.4e-149 534.3 457 59.1
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 1.1e-146 524.6 368 68.5
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 1.2e-145 521.2 539 50.1
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.6e-145 520.8 450 56.0
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 1.0e-131 474.9 346 65.0
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 8.7e-128 461.8 419 56.8
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 2.5e-119 433.7 421 52.0
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 8.8e-112 408.7 291 66.7
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 1.8e-101 374.4 331 59.5
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 1.4e-96 358.2 252 67.9
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 7.2e-82 309.3 238 66.0
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 3.5e-76 290.4 236 65.3
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 1.7e-75 288.1 397 42.8
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 4.0e-72 276.9 307 53.4
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 5.8e-71 273.1 272 50.4
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 1.0e-59 235.7 280 47.5
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 2.5e-58 231.1 192 58.3
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 1.2e-36 159.1 133 49.6
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 9.9e-31 139.4 147 54.4
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 2.2e-30 138.3 133 51.1
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 1.3e-27 129.0 510 27.6
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 4.3e-26 124.0 78 67.9
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 6.2e-25 120.2 131 52.7
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 5.6e-18 97.1 126 46.0
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 3.4e-15 87.8 49 75.5
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 4.5e-15 87.4 88 52.3
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 6.5e-14 83.6 225 32.9
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 4.2e-13 80.9 185 31.9
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 1.5e-10 72.4 171 28.7
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 7.4e-10 70.1 264 30.7
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 6.3e-09 67.0 57 56.1
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 2.0e-07 62.0 204 29.4


User provided reference genes

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