Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 0.0e+00 1390.2 699 100.0
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 3.8e-182 642.5 699 49.5
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.1e-170 604.4 697 48.6
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.3e-170 602.8 697 46.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.6e-170 602.1 695 48.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.6e-169 600.5 699 46.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 4.8e-169 599.0 685 47.7
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.2e-169 598.6 695 48.6
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-168 597.8 696 47.0
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-168 597.8 696 47.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-168 597.8 696 47.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.8e-168 597.0 695 48.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.0e-168 595.9 696 47.0
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 6.9e-168 595.1 697 47.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 9.0e-168 594.7 696 47.3
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 7.6e-167 591.7 697 46.1
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.4e-166 588.6 698 47.6
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 6.4e-166 588.6 685 47.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.7e-164 583.2 694 46.8
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 3.5e-164 582.8 687 45.6
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.5e-164 582.8 693 46.9
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 4.6e-164 582.4 695 47.5
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 7.9e-164 581.6 690 46.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.0e-163 581.3 705 46.8
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.8e-163 580.5 699 47.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 6.7e-163 578.6 697 45.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 8.7e-163 578.2 693 46.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.5e-162 576.6 696 46.0
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.5e-162 576.6 694 46.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 4.3e-162 575.9 700 47.1
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 5.6e-162 575.5 694 46.7
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-161 574.3 691 46.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 3.7e-161 572.8 695 46.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.8e-160 570.5 699 45.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 5.8e-159 565.5 688 43.6
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 9.9e-159 564.7 724 44.2
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.9e-157 560.5 702 46.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-156 557.4 694 45.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 4.6e-156 555.8 709 44.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 5.1e-155 552.4 711 45.6
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.5e-154 550.1 697 44.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 4.8e-153 545.8 701 44.7
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 8.2e-153 545.0 684 44.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 9.0e-152 541.6 698 45.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.2e-151 541.2 698 45.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.2e-151 541.2 718 44.2
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.0e-151 540.4 686 43.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.0e-151 540.4 649 45.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-150 537.7 680 44.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.1e-149 534.6 701 44.8
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.5e-146 523.5 695 43.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 7.4e-146 521.9 654 46.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.6e-145 520.8 695 44.2
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.4e-144 516.9 783 39.6
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 4.1e-144 516.2 699 44.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 9.0e-144 515.0 697 43.3
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 9.0e-144 515.0 697 43.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-143 514.6 712 42.8
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.5e-143 512.7 700 43.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.3e-142 511.1 696 43.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 8.5e-142 508.4 696 43.4
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.4e-141 507.7 694 42.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.2e-141 505.4 729 41.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 9.4e-141 505.0 694 42.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-140 503.4 704 42.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.9e-139 499.6 704 41.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 3.3e-138 496.5 703 41.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.7e-138 495.7 694 42.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 7.4e-138 495.4 704 42.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 7.4e-138 495.4 708 41.8
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.7e-137 494.2 704 41.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.7e-137 493.0 697 42.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 8.2e-137 491.9 722 42.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 8.2e-137 491.9 704 41.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 8.2e-137 491.9 701 42.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 8.2e-137 491.9 703 42.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 4.1e-136 489.6 784 39.9
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 5.3e-136 489.2 705 41.8
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.5e-135 487.6 699 41.5
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 4.5e-135 486.1 772 40.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.0e-134 485.0 695 40.3
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.1e-133 481.5 695 42.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.6e-132 477.6 694 40.2
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.6e-132 477.6 597 45.6
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 5.1e-131 472.6 692 41.9
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.5e-130 471.1 692 40.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 4.4e-130 469.5 705 40.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.3e-129 468.0 611 45.2
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.7e-129 467.6 698 40.4
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-128 464.9 704 40.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.8e-128 464.2 696 39.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.2e-127 461.5 650 40.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.0e-127 460.7 688 41.0
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.5e-119 433.3 696 39.2
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.2e-118 430.6 677 40.3
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 6.5e-118 429.1 735 37.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.4e-117 425.2 699 37.9
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.7e-114 416.0 645 39.2
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.7e-113 414.5 703 38.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.9e-111 406.0 700 36.9
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 6.5e-110 402.5 694 37.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 4.0e-107 393.3 548 41.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 6.6e-102 375.9 543 39.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 2.6e-98 364.0 513 39.6
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 9.2e-96 355.5 599 38.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 7.0e-88 329.3 696 34.2
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-87 327.8 695 34.0
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 9.5e-85 318.9 430 42.6
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.2e-82 312.0 706 34.4
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.4e-80 304.3 258 60.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.6e-78 296.2 287 58.2
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.1e-75 288.9 561 32.4
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 6.8e-75 286.2 227 63.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 7.5e-74 282.7 544 35.1
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.7e-73 281.6 782 29.8
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.7e-73 281.6 790 29.9
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.7e-73 281.6 790 29.9
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 7.1e-72 276.2 444 35.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-69 268.5 430 38.6
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.6e-68 265.0 227 59.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-63 248.8 402 37.1
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.3e-62 245.4 526 31.9
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 4.3e-61 240.4 192 62.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.8e-60 237.7 191 63.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.2e-58 232.3 350 38.3
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.6e-58 231.1 723 28.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 6.4e-57 226.5 193 60.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.2e-55 222.2 186 57.5
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.6e-52 211.8 264 47.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 9.0e-51 206.1 622 30.1
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.4e-48 196.8 322 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 2.1e-47 194.9 333 36.6
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 2.1e-47 194.9 138 69.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.5e-40 171.4 290 37.2
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.5e-40 170.2 197 45.2
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 5.1e-38 163.7 186 43.5
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.7e-33 148.7 140 57.1
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 3.5e-31 141.0 185 41.6
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.3e-30 138.3 213 38.0
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.6e-28 132.1 155 43.9
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.2e-28 131.7 121 55.4
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.1e-27 127.5 170 41.8
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-25 121.7 84 75.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-25 121.3 200 34.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.6e-23 115.5 183 33.9
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.3e-22 111.7 94 61.7
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.5e-21 108.2 100 56.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.7e-20 104.4 188 35.6
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 3.4e-18 97.8 164 37.8
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-17 95.5 95 49.5
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 8.5e-17 93.2 94 48.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.9e-14 84.3 249 27.7
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-10 72.8 65 53.8
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.4e-08 63.2 85 43.5
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.7e-06 57.0 183 30.1


User provided reference genes

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