Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005830 Vanilla planifolia HOM05D002608 ORTHO05D013420 4.5e-39 164.5 104 100.0
HPP92_005857 Vanilla planifolia HOM05D002608 ORTHO05D003838 1.6e-36 156.0 85 98.8
MBI01_g01189_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 1.9e-21 105.9 84 67.9
Hma1.2p1_0472F.1_g159760 Hydrangea macrophylla HOM05D002608 ORTHO05D003838 2.5e-18 95.5 85 55.3
Os01g0120800 Oryza sativa ssp. japonica HOM05D002608 ORTHO05D003838 1.4e-16 89.7 84 58.3
Hma1.2p1_1441F.1_g283600 Hydrangea macrophylla HOM05D002608 ORTHO05D003838 1.8e-16 89.4 85 57.6
PSO170G1119 Papaver somniferum HOM05D002608 ORTHO05D003838 1.8e-16 89.4 85 64.7
TAR374G0864 Trochodendron aralioides HOM05D002608 ORTHO05D003838 2.4e-16 89.0 83 55.4
Zm00001eb337210 Zea mays HOM05D002608 ORTHO05D003838 4.1e-16 88.2 84 59.5
Zm00001eb121480 Zea mays HOM05D002608 ORTHO05D003838 5.3e-16 87.8 84 59.5
Manes.09G174300 Manihot esculenta HOM05D002608 ORTHO05D003838 9.0e-16 87.0 84 53.6
PSO528G0014 Papaver somniferum HOM05D002608 ORTHO05D003838 9.0e-16 87.0 85 63.5
Atru.chr2.118 Acer truncatum HOM05D002608 ORTHO05D003838 1.2e-15 86.7 84 56.0
Cc06_g02900 Coffea canephora HOM05D002608 ORTHO05D003838 1.2e-15 86.7 84 53.6
Thecc.01G130800 Theobroma cacao HOM05D002608 ORTHO05D003838 1.2e-15 86.7 84 53.6
Sc02g0009020 Simmondsia chinensis HOM05D002608 ORTHO05D003838 2.6e-15 85.5 89 52.8
COL.COLO4_35714 Corchorus olitorius HOM05D002608 ORTHO05D003838 3.4e-15 85.1 85 52.9
Thecc.05G318700 Theobroma cacao HOM05D002608 ORTHO05D003838 3.4e-15 85.1 84 51.2
AUR62005245 Chenopodium quinoa HOM05D002608 ORTHO05D003838 4.5e-15 84.7 85 51.8
Lj2A99G56 Lonicera japonica HOM05D002608 ORTHO05D003838 4.5e-15 84.7 84 56.0
Potri.005G021400 Populus trichocarpa HOM05D002608 ORTHO05D003838 4.5e-15 84.7 84 53.6
CSS0020825 Camellia sinensis var. sinensis HOM05D002608 ORTHO05D003838 5.9e-15 84.3 83 55.4
Gohir.D08G224200 Gossypium hirsutum HOM05D002608 ORTHO05D003838 5.9e-15 84.3 85 50.6
MBI17_g38311_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 5.9e-15 84.3 84 57.1
Hund12489 Selenicereus undatus HOM05D002608 ORTHO05D003838 5.9e-15 84.3 85 52.9
Sc15g0004560 Simmondsia chinensis HOM05D002608 ORTHO05D003838 5.9e-15 84.3 85 52.9
Manes.08G114400 Manihot esculenta HOM05D002608 ORTHO05D003838 7.7e-15 84.0 84 53.6
GSVIVG01031192001 Vitis vinifera HOM05D002608 ORTHO05D003838 7.7e-15 84.0 84 53.6
AUR62000719 Chenopodium quinoa HOM05D002608 ORTHO05D003838 1.0e-14 83.6 85 50.6
PSO357G0420 Papaver somniferum HOM05D002608 ORTHO05D003838 1.0e-14 83.6 84 63.1
TAR365G0313 Trochodendron aralioides HOM05D002608 ORTHO05D003838 1.0e-14 83.6 83 53.0
COL.COLO4_03801 Corchorus olitorius HOM05D002608 ORTHO05D003838 1.3e-14 83.2 85 52.9
MD04G1196800 Malus domestica HOM05D002608 ORTHO05D003838 1.3e-14 83.2 85 50.6
MD12G1209700 Malus domestica HOM05D002608 ORTHO05D003838 1.3e-14 83.2 85 50.6
TAR383G0809 Trochodendron aralioides HOM05D002608 ORTHO05D003838 1.3e-14 83.2 83 53.0
Gorai.004G238100 Gossypium raimondii HOM05D002608 ORTHO05D003838 1.7e-14 82.8 85 49.4
Dinv24411 Davidia involucrata HOM05D002608 ORTHO05D003838 2.9e-14 82.0 83 55.4
Duzib106G0606 Durio zibethinus HOM05D002608 ORTHO05D003838 2.9e-14 82.0 85 50.6
Oeu049216.1 Olea europaea HOM05D002608 ORTHO05D003838 2.9e-14 82.0 84 51.2
Actinidia21508 Actinidia chinensis HOM05D002608 ORTHO05D003838 5.0e-14 81.3 83 48.2
Peaxi162Scf00039g01224 Petunia axillaris HOM05D002608 ORTHO05D003838 5.0e-14 81.3 83 54.2
Solyc09g010460.3 Solanum lycopersicum HOM05D002608 ORTHO05D003838 5.0e-14 81.3 83 54.2
Sopen09g005200 Solanum pennellii HOM05D002608 ORTHO05D003838 5.0e-14 81.3 84 53.6
Ah.04g154230 Amaranthus hybridus HOM05D002608 ORTHO05D013420 6.5e-14 80.9 85 50.6
DCAR_003377 Daucus carota HOM05D002608 ORTHO05D003838 6.5e-14 80.9 84 52.4
Gohir.A11G268500 Gossypium hirsutum HOM05D002608 ORTHO05D003838 6.5e-14 80.9 85 49.4
Lsat_1_v5_gn_1_55601 Lactuca sativa HOM05D002608 ORTHO05D003838 6.5e-14 80.9 85 52.9
Prupe.6G317100 Prunus persica HOM05D002608 ORTHO05D003838 6.5e-14 80.9 84 51.2
Sabra13G0010400 Salix brachista HOM05D002608 ORTHO05D003838 6.5e-14 80.9 85 51.8
CiPaw.07G025500 Carya illinoinensis HOM05D002608 ORTHO05D003838 8.5e-14 80.5 84 50.0
AUR62034876 Chenopodium quinoa HOM05D002608 ORTHO05D013420 8.5e-14 80.5 85 50.6
Nitab4.5_0003267g0030 Nicotiana tabacum HOM05D002608 ORTHO05D003838 8.5e-14 80.5 84 50.0
unitig_899.g15197 Utricularia gibba HOM05D002608 ORTHO05D003838 8.5e-14 80.5 84 47.6
Nn2g12763 Nelumbo nucifera HOM05D002608 ORTHO05D003838 1.1e-13 80.1 82 54.9
Sabra05G0027400 Salix brachista HOM05D002608 ORTHO05D003838 1.1e-13 80.1 84 50.0
PGSC0003DMG400008926 Solanum tuberosum HOM05D002608 ORTHO05D003838 1.1e-13 80.1 83 51.8
EL10Ac4g09869 Beta vulgaris HOM05D002608 ORTHO05D003838 1.4e-13 79.7 85 49.4
CAN.G97.14 Capsicum annuum HOM05D002608 ORTHO05D003838 1.4e-13 79.7 84 52.4
Nitab4.5_0000202g0170 Nicotiana tabacum HOM05D002608 ORTHO05D003838 1.4e-13 79.7 83 53.0
Nitab4.5_0002077g0030 Nicotiana tabacum HOM05D002608 ORTHO05D003838 1.9e-13 79.3 84 51.2
QL03p017837 Quercus lobata HOM05D002608 ORTHO05D003838 1.9e-13 79.3 85 47.1
QL93p2009_0049 Quercus lobata HOM05D002608 ORTHO05D003838 1.9e-13 79.3 85 47.1
Migut.H01296 Erythranthe guttata HOM05D002608 ORTHO05D003838 2.5e-13 79.0 82 51.2
Nitab4.5_0000216g0080 Nicotiana tabacum HOM05D002608 ORTHO05D003838 2.5e-13 79.0 84 51.2
Potri.013G011900 Populus trichocarpa HOM05D002608 ORTHO05D003838 2.5e-13 79.0 85 49.4
Aa31LG6G6570 Aethionema arabicum HOM05D002608 ORTHO05D003838 4.2e-13 78.2 83 48.2
ECA247G1225 Erigeron canadensis HOM05D002608 ORTHO05D003838 4.2e-13 78.2 85 45.9
Medtr7g099920 Medicago truncatula HOM05D002608 ORTHO05D003838 4.2e-13 78.2 85 52.9
RcHm_v2.0_Chr3g0456551 Rosa chinensis HOM05D002608 ORTHO05D003838 4.2e-13 78.2 84 48.8
MSTRG.18039 Avicennia marina HOM05D002608 ORTHO05D003838 5.5e-13 77.8 79 53.2
TWI36G0315 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 7.2e-13 77.4 84 46.4
Ca_08783_v3 Cicer arietinum L. HOM05D002608 ORTHO05D003838 9.4e-13 77.0 83 50.6
ECA240G3079 Erigeron canadensis HOM05D002608 ORTHO05D003838 9.4e-13 77.0 85 44.7
Lsat_1_v5_gn_7_67461 Lactuca sativa HOM05D002608 ORTHO05D003838 1.2e-12 76.6 85 44.7
Hund07119 Selenicereus undatus HOM05D002608 ORTHO05D003838 1.6e-12 76.3 85 50.6
Rhsim05G0135800 Rhododendron simsii HOM05D002608 ORTHO05D003838 2.1e-12 75.9 83 48.2
FvH4_6g07021 Fragaria vesca HOM05D002608 ORTHO05D003838 2.7e-12 75.5 85 48.2
FAN14G0019 Fragaria x ananassa HOM05D002608 ORTHO05D003838 2.7e-12 75.5 85 48.2
TWI12G0370 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 2.7e-12 75.5 84 47.6
Carub.0006s3036 Capsella rubella HOM05D002608 ORTHO05D003838 3.6e-12 75.1 80 47.5
HanXRQChr14g0452151 Helianthus annuus HOM05D002608 ORTHO05D003838 3.6e-12 75.1 84 42.9
Lalb_Chr20g0113231 Lupinus albus HOM05D002608 ORTHO05D003838 3.6e-12 75.1 84 50.0
Ca_08785_v3 Cicer arietinum L. HOM05D002608 ORTHO05D003838 4.6e-12 74.7 79 49.4
DCAR_022132 Daucus carota HOM05D002608 ORTHO05D003838 4.6e-12 74.7 84 53.6
SalBow6G5981 Salvia bowleyana HOM05D002608 ORTHO05D003838 4.6e-12 74.7 83 48.2
TPR.G21685 Trifolium pratense HOM05D002608 ORTHO05D013420 4.6e-12 74.7 84 50.0
TWI56G0709 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 4.6e-12 74.7 84 46.4
Cfa006672 Carpinus fangiana HOM05D002608 ORTHO05D003838 6.1e-12 74.3 84 45.2
FAN05G0606 Fragaria x ananassa HOM05D002608 ORTHO05D003838 6.1e-12 74.3 85 47.1
Peaxi162Scf01093g00011 Petunia axillaris HOM05D002608 ORTHO05D003838 6.1e-12 74.3 79 50.6
VMungo1383G2288 Vigna mungo HOM05D002608 ORTHO05D003838 6.1e-12 74.3 82 50.0
Carub.0007s1783 Capsella rubella HOM05D002608 ORTHO05D013040 1.0e-11 73.6 83 48.2
CDE06G2290 Ceratophyllum demersum HOM05D002608 ORTHO05D003838 1.4e-11 73.2 84 50.0
ClCG03G017600 Citrullus lanatus HOM05D002608 ORTHO05D003838 1.4e-11 73.2 85 45.9
Ciclev10000154m.g Citrus clementina HOM05D002608 ORTHO05D003838 1.4e-11 73.2 85 47.1
PSO170G4769 Papaver somniferum HOM05D002608 ORTHO05D003838 1.4e-11 73.2 75 61.3
Aa31LG9G10810 Aethionema arabicum HOM05D002608 ORTHO05D003838 1.8e-11 72.8 83 45.8
Aqoxy7G00914 Aquilegia oxysepala HOM05D002608 ORTHO05D003838 2.3e-11 72.4 84 51.2
Psat3g048960 Pisum sativum HOM05D002608 ORTHO05D003838 2.3e-11 72.4 84 48.8
Haze_04099 Corylus avellana HOM05D002608 ORTHO05D003838 3.0e-11 72.0 84 45.2
MBI17_g38313_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 3.0e-11 72.0 52 71.2
arahy.Tifrunner.gnm1.ann1.6UH7HR Arachis hypogaea HOM05D002608 ORTHO05D003838 3.9e-11 71.6 84 48.8
arahy.Tifrunner.gnm1.ann1.PFNK2V Arachis hypogaea HOM05D002608 ORTHO05D003838 3.9e-11 71.6 84 48.8
CDE07G0225 Ceratophyllum demersum HOM05D002608 ORTHO05D003838 3.9e-11 71.6 84 48.8
ClCG03G006160 Citrullus lanatus HOM05D002608 ORTHO05D003838 3.9e-11 71.6 85 45.9
FAN02G0527 Fragaria x ananassa HOM05D002608 ORTHO05D003838 3.9e-11 71.6 83 47.0
Glyma.03G172200 Glycine max HOM05D002608 ORTHO05D003838 3.9e-11 71.6 82 48.8
PGR031G1858 Punica granatum HOM05D002608 ORTHO05D003838 3.9e-11 71.6 79 49.4
AL6G45870 Arabidopsis lyrata HOM05D002608 ORTHO05D003838 5.1e-11 71.2 84 45.2
BcaC03g16352 Brassica carinata HOM05D002608 ORTHO05D003838 5.1e-11 71.2 84 46.4
A02p26260 Brassica napus HOM05D002608 ORTHO05D003838 5.1e-11 71.2 84 46.4
C02p41770 Brassica napus HOM05D002608 ORTHO05D003838 5.1e-11 71.2 84 46.4
BolC2t10192H Brassica oleracea HOM05D002608 ORTHO05D003838 5.1e-11 71.2 84 46.4
BraA02t07627Z Brassica rapa HOM05D002608 ORTHO05D003838 5.1e-11 71.2 84 46.4
AUR62026623 Chenopodium quinoa HOM05D002608 ORTHO05D003838 5.1e-11 71.2 85 47.1
AT4G11420 Arabidopsis thaliana HOM05D002608 ORTHO05D003838 6.7e-11 70.9 80 47.5
BcaC01g04630 Brassica carinata HOM05D002608 ORTHO05D003838 6.7e-11 70.9 84 45.2
BolC3t15861H Brassica oleracea HOM05D002608 ORTHO05D003838 6.7e-11 70.9 84 45.2
CANSAT56G4271 Cannabis sativa HOM05D002608 ORTHO05D003838 6.7e-11 70.9 84 45.2
DCAR_014838 Daucus carota HOM05D002608 ORTHO05D003838 6.7e-11 70.9 84 47.6
Dinv05264 Davidia involucrata HOM05D002608 ORTHO05D003838 6.7e-11 70.9 73 49.3
Phvul.001G169900 Phaseolus vulgaris HOM05D002608 ORTHO05D003838 6.7e-11 70.9 83 45.8
C03p35460 Brassica napus HOM05D002608 ORTHO05D003838 8.8e-11 70.5 84 45.2
PGR142G3882 Punica granatum HOM05D002608 ORTHO05D003838 8.8e-11 70.5 79 48.1
Sp6g06010 Schrenkiella parvula HOM05D002608 ORTHO05D003838 8.8e-11 70.5 84 45.2
BcaB01g02695 Brassica carinata HOM05D002608 ORTHO05D003838 1.1e-10 70.1 84 45.2
SalBow2G2051 Salvia bowleyana HOM05D002608 ORTHO05D003838 1.1e-10 70.1 84 44.0
A03p29350 Brassica napus HOM05D002608 ORTHO05D003838 1.5e-10 69.7 84 45.2
BraA03t12132Z Brassica rapa HOM05D002608 ORTHO05D003838 1.5e-10 69.7 84 45.2
MELO3C002822.2 Cucumis melo HOM05D002608 ORTHO05D003838 1.5e-10 69.7 85 44.7
CsaV3_1G037240 Cucumis sativus L. HOM05D002608 ORTHO05D003838 1.5e-10 69.7 81 45.7
Medtr7g098840 Medicago truncatula HOM05D002608 ORTHO05D017777 2.0e-10 69.3 83 50.6
BcaB05g23828 Brassica carinata HOM05D002608 ORTHO05D003838 2.5e-10 68.9 84 45.2
Glyma.19G173100 Glycine max HOM05D002608 ORTHO05D003838 2.5e-10 68.9 79 46.8
Lj1g0021618 Lotus japonicus HOM05D002608 ORTHO05D003838 2.5e-10 68.9 85 44.7
PGSC0003DMG400010999 Solanum tuberosum HOM05D002608 ORTHO05D003838 4.3e-10 68.2 84 44.0
BcaC04g21147 Brassica carinata HOM05D002608 ORTHO05D003838 5.7e-10 67.8 84 44.0
A09p27650 Brassica napus HOM05D002608 ORTHO05D003838 5.7e-10 67.8 84 44.0
C09p35000 Brassica napus HOM05D002608 ORTHO05D003838 5.7e-10 67.8 84 44.0
BolC9t56346H Brassica oleracea HOM05D002608 ORTHO05D003838 5.7e-10 67.8 84 44.0
BraA09t38334Z Brassica rapa HOM05D002608 ORTHO05D003838 5.7e-10 67.8 84 44.0
SGA_v2.0_scaffold92G28166 Striga asiatica HOM05D002608 ORTHO05D003838 5.7e-10 67.8 83 45.8
BcaB01g01651 Brassica carinata HOM05D002608 ORTHO05D003838 7.4e-10 67.4 84 44.0
Cpa.g.sc48.127 Carica papaya HOM05D002608 ORTHO05D003838 1.3e-09 66.6 83 47.0
HanXRQChr09g0247971 Helianthus annuus HOM05D002608 ORTHO05D003838 1.3e-09 66.6 83 41.0
HanXRQChr10g0293771 Helianthus annuus HOM05D002608 ORTHO05D013420 1.3e-09 66.6 83 41.0
Ah.13g074150 Amaranthus hybridus HOM05D002608 ORTHO05D021193 1.7e-09 66.2 85 43.5
Lsat_1_v5_gn_9_123961 Lactuca sativa HOM05D002608 ORTHO05D003838 2.2e-09 65.9 82 40.2
THA.LOC104814584 Tarenaya hassleriana HOM05D002608 ORTHO05D003838 2.2e-09 65.9 73 47.9
Eucgr.H03271 Eucalyptus grandis HOM05D002608 ORTHO05D003838 2.8e-09 65.5 66 50.0
ECA234G4518 Erigeron canadensis HOM05D002608 ORTHO05D003031 4.8e-09 64.7 84 41.7
BcaNung03267 Brassica carinata HOM05D002608 ORTHO05D003838 6.3e-09 64.3 90 42.2
CsaV3_1G037230 Cucumis sativus L. HOM05D002608 ORTHO05D003838 8.2e-09 63.9 81 43.2
Migut.F01887 Erythranthe guttata HOM05D002608 ORTHO05D003838 8.2e-09 63.9 71 49.3
Sopen10g034110 Solanum pennellii HOM05D002608 ORTHO05D003838 5.3e-08 61.2 84 44.0
BraA03t14483Z Brassica rapa HOM05D002608 ORTHO05D003838 3.4e-07 58.5 90 38.9
Solyc10g084670.3 Solanum lycopersicum HOM05D002608 ORTHO05D003838 3.4e-07 58.5 84 42.9
BolC7t45756H Brassica oleracea HOM05D002608 ORTHO05D003838 4.5e-07 58.2 90 38.9
CiPaw.10G143500 Carya illinoinensis HOM05D002608 ORTHO05D003838 4.5e-07 58.2 83 43.4
Lalb_Chr01g0019231 Lupinus albus HOM05D002608 ORTHO05D003838 4.5e-07 58.2 53 52.8
Gohir.D11G278500 Gossypium hirsutum HOM05D002608 ORTHO05D003838 5.9e-07 57.8 53 52.8
Gohir.D11G280900 Gossypium hirsutum HOM05D002608 ORTHO05D003838 5.9e-07 57.8 48 56.2
Duzib177G0789 Durio zibethinus HOM05D002608 ORTHO05D003838 7.7e-07 57.4 85 40.0
SHI15014 Sapria himalayana HOM05D002608 ORTHO05D003838 1.3e-06 56.6 83 37.3
Gohir.A08G207600 Gossypium hirsutum HOM05D002608 ORTHO05D003838 1.7e-06 56.2 53 50.9
CiPaw.09G189400 Carya illinoinensis HOM05D002608 ORTHO05D003838 2.2e-06 55.8 83 43.4
Gorai.007G300600 Gossypium raimondii HOM05D002608 ORTHO05D003838 2.9e-06 55.5 85 37.6
HPP92_005911 Vanilla planifolia HOM05D002608 ORTHO05D003838 2.9e-06 55.5 27 100.0
Gorai.007G303300 Gossypium raimondii HOM05D002608 ORTHO05D003838 3.8e-06 55.1 50 54.0
CsaV3_1G037250 Cucumis sativus L. HOM05D002608 ORTHO05D003838 5.0e-06 54.7 81 37.0
BcaNung01455 Brassica carinata HOM05D002608 ORTHO05D003838 6.5e-06 54.3 90 37.8
C07p52590 Brassica napus HOM05D002608 ORTHO05D000101 6.5e-06 54.3 90 37.8


User provided reference genes

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