Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005811 Vanilla planifolia HOM05D001841 ORTHO05D001767 5.8e-141 504.2 256 100.0
Actinidia00458 Actinidia chinensis HOM05D001841 ORTHO05D001767 1.4e-17 94.4 316 32.0
CDE10G1361 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 1.4e-17 94.4 305 30.8
HPP92_027225 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.4e-17 94.4 269 33.1
AL3G47510 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 2.6e-16 90.1 313 31.0
AT2G15760 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 2.6e-16 90.1 313 30.7
CARHR106090 Cardamine hirsuta HOM05D001841 ORTHO05D001767 3.4e-16 89.7 288 31.9
Sp3g29010 Schrenkiella parvula HOM05D001841 ORTHO05D001767 3.4e-16 89.7 284 32.4
Ca_18656_v3 Cicer arietinum L. HOM05D001841 ORTHO05D001767 1.0e-15 88.2 328 30.8
CDE10G1358 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 1.7e-15 87.4 305 32.5
Psat7g121880 Pisum sativum HOM05D001841 ORTHO05D001767 2.2e-15 87.0 316 31.0
BcaB07g31782 Brassica carinata HOM05D001841 ORTHO05D001767 3.8e-15 86.3 288 30.6
Actinidia12979 Actinidia chinensis HOM05D001841 ORTHO05D001767 5.0e-15 85.9 300 31.0
Thhalv10022784m.g Eutrema salsugineum HOM05D001841 ORTHO05D001767 6.5e-15 85.5 287 31.4
Carub.0003s2959 Capsella rubella HOM05D001841 ORTHO05D001767 8.5e-15 85.1 293 31.1
Medtr4g086620 Medicago truncatula HOM05D001841 ORTHO05D001767 8.5e-15 85.1 331 31.1
A09p10870 Brassica napus HOM05D001841 ORTHO05D001767 4.2e-14 82.8 287 29.3
BraA09t36727Z Brassica rapa HOM05D001841 ORTHO05D001767 4.2e-14 82.8 287 29.3
Lsat_1_v5_gn_4_124961 Lactuca sativa HOM05D001841 ORTHO05D001767 7.2e-14 82.0 312 29.2
C09p12820 Brassica napus HOM05D001841 ORTHO05D001767 1.6e-13 80.9 287 29.3
BolC9t54171H Brassica oleracea HOM05D001841 ORTHO05D001767 1.6e-13 80.9 287 29.3
BcaB03g16318 Brassica carinata HOM05D001841 ORTHO05D001767 2.1e-13 80.5 284 32.0
Phvul.003G294400 Phaseolus vulgaris HOM05D001841 ORTHO05D001767 2.7e-13 80.1 297 32.0
BcaC04g23039 Brassica carinata HOM05D001841 ORTHO05D001767 4.6e-13 79.3 287 28.9
BcaC06g36083 Brassica carinata HOM05D001841 ORTHO05D001767 7.9e-13 78.6 271 33.2
C07p08040 Brassica napus HOM05D001841 ORTHO05D001767 7.9e-13 78.6 271 33.2
BolC7t41221H Brassica oleracea HOM05D001841 ORTHO05D001767 7.9e-13 78.6 271 33.2
DCAR_022057 Daucus carota HOM05D001841 ORTHO05D001767 1.0e-12 78.2 280 32.1
Nitab4.5_0005549g0020 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.0e-12 78.2 319 28.2
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.4e-12 77.8 349 30.1
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 1.8e-12 77.4 370 28.6
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 3.0e-12 76.6 349 30.4
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 3.9e-12 76.3 347 28.2
CSS0048284 Camellia sinensis var. sinensis HOM05D001841 ORTHO05D001767 5.1e-12 75.9 317 30.0
BraA07t28298Z Brassica rapa HOM05D001841 ORTHO05D001767 6.7e-12 75.5 270 31.1
TWI31G1305 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 8.8e-12 75.1 298 30.9
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 1.1e-11 74.7 333 28.5
Nitab4.5_0000068g0430 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.5e-11 74.3 327 28.4
Gohir.A12G025600 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.0e-11 73.9 338 28.7
MBI06_g08193_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 2.0e-11 73.9 243 30.0
COL.COLO4_26453 Corchorus olitorius HOM05D001841 ORTHO05D001767 2.5e-11 73.6 272 30.1
TAR376G0142 Trochodendron aralioides HOM05D001841 ORTHO05D001767 2.5e-11 73.6 221 33.5
Gorai.008G025600 Gossypium raimondii HOM05D001841 ORTHO05D001767 4.3e-11 72.8 343 28.0
Peaxi162Scf00566g00042 Petunia axillaris HOM05D001841 ORTHO05D001767 4.3e-11 72.8 303 28.1
GSVIVG01009563001 Vitis vinifera HOM05D001841 ORTHO05D001767 4.3e-11 72.8 202 31.2
Peaxi162Scf00016g01610 Petunia axillaris HOM05D001841 ORTHO05D001767 7.4e-11 72.0 293 27.0
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 9.7e-11 71.6 337 28.8
Glyma.02G134500 Glycine max HOM05D001841 ORTHO05D001767 9.7e-11 71.6 310 28.7
Nitab4.5_0001413g0040 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.7e-10 70.9 238 33.2
CAN.G371.51 Capsicum annuum HOM05D001841 ORTHO05D001767 2.2e-10 70.5 320 26.9
HanXRQChr16g0507771 Helianthus annuus HOM05D001841 ORTHO05D001767 2.8e-10 70.1 316 26.9
PGSC0003DMG400007993 Solanum tuberosum HOM05D001841 ORTHO05D001767 3.7e-10 69.7 326 26.4
Atru.chr5.2772 Acer truncatum HOM05D001841 ORTHO05D001767 4.8e-10 69.3 343 27.7
A07p05070 Brassica napus HOM05D001841 ORTHO05D001767 4.8e-10 69.3 275 29.8
CiPaw.16G048100 Carya illinoinensis HOM05D001841 ORTHO05D001767 4.8e-10 69.3 342 27.8
CDE06G1867 Ceratophyllum demersum HOM05D000370 ORTHO05D001366 4.8e-10 69.3 341 28.4
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 4.8e-10 69.3 177 37.3
Gohir.D12G025300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.3e-10 68.9 343 27.4
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 8.2e-10 68.6 320 27.8
TWI75G0920 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 8.2e-10 68.6 317 29.3
THA.LOC104807355 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 1.1e-09 68.2 342 27.5
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.4e-09 67.8 313 27.2
Migut.C00606 Erythranthe guttata HOM05D001841 ORTHO05D001767 1.8e-09 67.4 276 29.3
TWI79G0295 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 1.8e-09 67.4 321 29.3
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 1.8e-09 67.4 344 27.9
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 2.4e-09 67.0 348 27.0
Aa31LG8G13350 Aethionema arabicum HOM05D001841 ORTHO05D001767 3.1e-09 66.6 305 28.5
Actinidia29858 Actinidia chinensis HOM05D000370 ORTHO05D001366 4.1e-09 66.2 237 29.5
MD08G1106900 Malus domestica HOM05D001841 ORTHO05D001767 4.1e-09 66.2 353 25.5
CiPaw.05G053900 Carya illinoinensis HOM05D001841 ORTHO05D001767 5.3e-09 65.9 244 29.1
AUR62022462 Chenopodium quinoa HOM05D001841 ORTHO05D001767 5.3e-09 65.9 280 28.6
VMungo0251G0262 Vigna mungo HOM05D001841 ORTHO05D001767 5.3e-09 65.9 317 28.7
VMungo1383G3394 Vigna mungo HOM05D003270 ORTHO05D003662 6.9e-09 65.5 304 29.3
Lj9C359T11 Lonicera japonica HOM05D001841 ORTHO05D001767 9.1e-09 65.1 192 33.3
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 9.1e-09 65.1 174 36.2
DCAR_020935 Daucus carota HOM05D001841 ORTHO05D001767 1.2e-08 64.7 239 28.9
HanXRQChr02g0038471 Helianthus annuus HOM05D001841 ORTHO05D001767 1.2e-08 64.7 263 28.9
Lj4C50T9 Lonicera japonica HOM05D001841 ORTHO05D001767 1.2e-08 64.7 265 28.3
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 1.2e-08 64.7 313 26.5
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 1.2e-08 64.7 306 27.5
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.5e-08 64.3 89 44.9
ECA247G0952 Erigeron canadensis HOM05D001841 ORTHO05D001767 2.6e-08 63.5 191 34.6
Glyma.07G210700 Glycine max HOM05D001841 ORTHO05D001767 2.6e-08 63.5 309 28.2
PSO017G5918 Papaver somniferum HOM05D001841 ORTHO05D001767 2.6e-08 63.5 354 27.7
Rhsim07G0231600 Rhododendron simsii HOM05D001841 ORTHO05D001767 2.6e-08 63.5 173 32.4
DCAR_019469 Daucus carota HOM05D001841 ORTHO05D001767 3.4e-08 63.2 246 29.7
Glyma.20G010200 Glycine max HOM05D001841 ORTHO05D001767 3.4e-08 63.2 257 30.0
HanXRQChr09g0268031 Helianthus annuus HOM05D001841 ORTHO05D001767 3.4e-08 63.2 306 28.8
Lsat_1_v5_gn_1_19921 Lactuca sativa HOM05D001841 ORTHO05D001767 3.4e-08 63.2 258 30.6
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 3.4e-08 63.2 363 26.7
PGSC0003DMG400025897 Solanum tuberosum HOM05D001841 ORTHO05D001767 3.4e-08 63.2 289 26.0
Dinv23581 Davidia involucrata HOM05D001841 ORTHO05D001767 4.5e-08 62.8 258 29.5
CAN.G322.15 Capsicum annuum HOM05D001841 ORTHO05D001767 5.9e-08 62.4 295 25.8
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 5.9e-08 62.4 349 27.2
CAN.G213.4 Capsicum annuum HOM05D001841 ORTHO05D001767 7.7e-08 62.0 260 31.2
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 7.7e-08 62.0 178 34.3
ECA232G5028 Erigeron canadensis HOM05D001841 ORTHO05D001767 1.0e-07 61.6 321 27.7
PSO170G0875 Papaver somniferum HOM05D001841 ORTHO05D001767 1.0e-07 61.6 353 25.8
Glyma.19G229100 Glycine max HOM05D003270 ORTHO05D003662 1.3e-07 61.2 306 29.7
Gohir.D01G106700 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.3e-07 61.2 326 29.1
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 1.7e-07 60.8 75 46.7
CiPaw.06G142300 Carya illinoinensis HOM05D001841 ORTHO05D001767 1.7e-07 60.8 196 30.6
HanXRQChr03g0072211 Helianthus annuus HOM05D001841 ORTHO05D001767 1.7e-07 60.8 314 28.0
THA.LOC104819587 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 1.7e-07 60.8 315 27.6
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 2.2e-07 60.5 178 34.3
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 2.2e-07 60.5 321 29.6
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 2.9e-07 60.1 376 25.5
Ciclev10028742m.g Citrus clementina HOM05D001841 ORTHO05D001767 5.0e-07 59.3 351 26.5
HanXRQChr03g0073781 Helianthus annuus HOM05D003270 ORTHO05D003662 5.0e-07 59.3 293 28.7
Phvul.001G019300 Phaseolus vulgaris HOM05D001841 ORTHO05D001767 5.0e-07 59.3 280 30.0
CAN.G213.2 Capsicum annuum HOM05D001841 ORTHO05D001767 6.5e-07 58.9 276 29.7
DCAR_012363 Daucus carota HOM05D003270 ORTHO05D003662 6.5e-07 58.9 81 49.4
Lju1295C4T4 Lonicera japonica HOM05D003270 ORTHO05D003662 6.5e-07 58.9 292 27.1
Glyma.03G232100 Glycine max HOM05D003270 ORTHO05D003662 8.5e-07 58.5 235 31.5
COL.COLO4_32685 Corchorus olitorius HOM05D001841 ORTHO05D001767 1.1e-06 58.2 265 28.7
Rhsim05G0081500 Rhododendron simsii HOM05D001841 ORTHO05D001767 1.1e-06 58.2 183 34.4
Actinidia15261 Actinidia chinensis HOM05D001841 ORTHO05D001767 1.4e-06 57.8 263 27.4
Duzib116G0233 Durio zibethinus HOM05D001841 ORTHO05D001767 1.4e-06 57.8 378 25.9
Glyma.14G080200 Glycine max HOM05D001841 ORTHO05D001767 1.4e-06 57.8 293 30.0
Gohir.A13G039000 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.4e-06 57.8 210 33.3
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 1.4e-06 57.8 206 31.1
MD15G1087600 Malus domestica HOM05D001841 ORTHO05D001767 1.4e-06 57.8 183 29.0
MELO3C018439.2 Cucumis melo HOM05D001841 ORTHO05D001767 1.9e-06 57.4 180 32.2
Nn1g05855 Nelumbo nucifera HOM05D001841 ORTHO05D001767 1.9e-06 57.4 176 31.8
A09p10840 Brassica napus HOM05D001841 ORTHO05D001767 2.5e-06 57.0 114 36.8
AUR62040062 Chenopodium quinoa HOM05D001841 ORTHO05D001767 2.5e-06 57.0 172 31.4
PGR083G2104 Punica granatum HOM05D001841 ORTHO05D001767 2.5e-06 57.0 78 37.2
Rhsim06G0046400 Rhododendron simsii HOM05D001841 ORTHO05D001767 2.5e-06 57.0 290 29.7
SalBow6G4282 Salvia bowleyana HOM05D001841 ORTHO05D001767 2.5e-06 57.0 111 36.9
Duzib248G1481 Durio zibethinus HOM05D001841 ORTHO05D001767 3.2e-06 56.6 164 31.7
HanXRQChr02g0038421 Helianthus annuus HOM05D001841 ORTHO05D001767 3.2e-06 56.6 200 31.0
Medtr1g021070 Medicago truncatula HOM05D001841 ORTHO05D001767 3.2e-06 56.6 306 28.4
HanXRQChr04g0104251 Helianthus annuus HOM05D001841 ORTHO05D001767 4.2e-06 56.2 265 29.8
Lsat_1_v5_gn_5_102781 Lactuca sativa HOM05D003270 ORTHO05D003662 4.2e-06 56.2 63 55.6
Oeu009759.1 Olea europaea HOM05D001841 ORTHO05D001767 4.2e-06 56.2 49 59.2
Solyc01g108440.2 Solanum lycopersicum HOM05D001841 ORTHO05D001767 4.2e-06 56.2 302 23.8
Cpa.g.sc62.35 Carica papaya HOM05D001841 ORTHO05D001767 5.5e-06 55.8 385 26.2
Cfa005454 Carpinus fangiana HOM05D001841 ORTHO05D001767 5.5e-06 55.8 193 30.6
DCAR_022053 Daucus carota HOM05D001841 ORTHO05D001767 5.5e-06 55.8 172 32.6
Lalb_Chr16g0384591 Lupinus albus HOM05D001841 ORTHO05D001767 5.5e-06 55.8 351 27.1
Nitab4.5_0000557g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 5.5e-06 55.8 256 29.7
MSTRG.1330 Avicennia marina HOM05D001841 ORTHO05D001767 7.2e-06 55.5 167 32.3
Gorai.002G007300 Gossypium raimondii HOM05D001841 ORTHO05D001767 7.2e-06 55.5 318 27.7
Lj4P776T21 Lonicera japonica HOM05D001841 ORTHO05D001767 7.2e-06 55.5 226 27.4
QL11p037275 Quercus lobata HOM05D001841 ORTHO05D001767 7.2e-06 55.5 168 33.3
Rhsim11G0093900 Rhododendron simsii HOM05D003270 ORTHO05D003662 7.2e-06 55.5 116 39.7
Thecc.02G097700 Theobroma cacao HOM05D001841 ORTHO05D001767 7.2e-06 55.5 169 31.4
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 7.2e-06 55.5 373 24.9
VMungo0647G0868 Vigna mungo HOM05D001841 ORTHO05D001767 7.2e-06 55.5 279 30.5
Haze_01864 Corylus avellana HOM05D001841 ORTHO05D001767 9.4e-06 55.1 194 32.0
MELO3C016732.2 Cucumis melo HOM05D001841 ORTHO05D001767 9.4e-06 55.1 295 24.7
CsaV3_4G034090 Cucumis sativus L. HOM05D001841 ORTHO05D001767 9.4e-06 55.1 295 25.4
Gorai.002G130900 Gossypium raimondii HOM05D001841 ORTHO05D001767 9.4e-06 55.1 338 26.6
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 9.4e-06 55.1 193 32.1
Oeu003301.1 Olea europaea HOM05D001841 ORTHO05D001767 9.4e-06 55.1 55 45.5
Oeu008454.1 Olea europaea HOM05D003270 ORTHO05D003662 9.4e-06 55.1 236 30.5
Os07g0619500 Oryza sativa ssp. japonica HOM05D001841 ORTHO05D001767 9.4e-06 55.1 68 41.2
vmacro01553 Vaccinium macrocarpon HOM05D003270 ORTHO05D003662 9.4e-06 55.1 98 41.8


User provided reference genes

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