Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 4.4e-130 468.0 245 100.0
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 3.0e-33 146.4 243 41.6
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 7.3e-32 141.7 239 45.2
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 9.5e-32 141.4 239 45.2
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 3.6e-31 139.4 239 42.7
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 4.7e-31 139.0 235 43.4
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 4.7e-31 139.0 235 43.4
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.1e-30 137.9 225 46.2
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.4e-30 137.5 243 44.4
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.3e-30 136.7 232 41.4
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.1e-30 136.3 248 41.1
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 4.0e-30 136.0 223 44.8
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 5.2e-30 135.6 237 41.8
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 1.5e-29 134.0 224 41.5
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 3.4e-29 132.9 252 41.7
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 5.8e-29 132.1 225 44.9
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 5.8e-29 132.1 222 44.1
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 5.8e-29 132.1 251 38.6
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 9.9e-29 131.3 227 41.9
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 9.9e-29 131.3 236 41.5
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.7e-28 130.6 238 41.6
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 3.7e-28 129.4 238 41.6
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 3.7e-28 129.4 246 41.1
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 3.7e-28 129.4 240 41.7
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 4.9e-28 129.0 237 41.4
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 4.9e-28 129.0 229 42.8
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 3.2e-27 126.3 233 41.6
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 9.2e-27 124.8 240 42.1
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 2.1e-26 123.6 240 41.2
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 4.6e-26 122.5 240 39.6
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 1.0e-25 121.3 224 42.4
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 3.0e-25 119.8 248 39.9
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 8.6e-25 118.2 224 38.8
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 2.5e-24 116.7 229 38.9
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.5e-24 116.7 247 38.5
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 2.5e-24 116.7 238 38.7
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 3.3e-24 116.3 228 42.1
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 4.3e-24 115.9 222 41.0
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 4.3e-24 115.9 254 37.8
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 5.6e-24 115.5 280 35.0
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 7.3e-24 115.2 209 41.6
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 1.6e-23 114.0 242 38.4
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 2.8e-23 113.2 227 40.1
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.8e-22 110.5 230 40.4
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.4e-22 110.2 222 38.3
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 3.1e-22 109.8 244 36.1
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 4.0e-22 109.4 223 40.4
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 8.9e-22 108.2 231 38.5
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 8.9e-22 108.2 222 40.5
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 1.5e-21 107.5 239 36.8
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 2.0e-21 107.1 239 36.0
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 4.4e-21 105.9 221 38.5
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 7.6e-21 105.1 225 38.2
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 1.3e-20 104.4 277 32.5
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 2.2e-20 103.6 259 37.5
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 4.9e-20 102.4 215 37.7
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 6.4e-20 102.1 239 34.3
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.9e-19 100.5 234 36.3
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 3.2e-19 99.8 234 35.9
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 5.4e-19 99.0 223 36.3
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 9.2e-19 98.2 221 37.1
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.2e-18 97.8 170 42.4
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 2.1e-18 97.1 252 34.9
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 2.1e-18 97.1 271 35.1
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 7.8e-18 95.1 214 37.9
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 7.8e-18 95.1 252 36.1
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 1.7e-17 94.0 231 34.6
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 3.9e-17 92.8 165 39.4
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 5.1e-17 92.4 159 44.0
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.5e-16 90.9 259 33.2
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 5.6e-16 89.0 145 45.5
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 1.2e-15 87.8 225 35.1
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.8e-15 86.7 231 34.6
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 1.1e-14 84.7 194 39.2
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 1.2e-13 81.3 204 32.8
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 3.4e-13 79.7 260 33.5
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 6.4e-12 75.5 222 32.9
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 1.4e-11 74.3 226 32.3
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 1.9e-11 73.9 227 30.4
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 2.4e-11 73.6 223 29.6
Zm00001eb391910 Zea mays HOM05D036147 ORTHO05D008751 7.1e-11 72.0 238 30.7
Zm00001eb243820 Zea mays HOM05D036147 ORTHO05D008751 1.2e-10 71.2 222 31.5
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.6e-10 70.9 274 32.5
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 2.1e-10 70.5 246 32.9
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 2.1e-10 70.5 226 29.2
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 4.6e-10 69.3 226 28.3
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 6.0e-10 68.9 134 41.8
Os02g0554200 Oryza sativa ssp. japonica HOM05D036147 ORTHO05D008751 7.8e-10 68.6 248 29.0
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 7.8e-10 68.6 220 29.1
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 1.0e-09 68.2 276 31.9
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 1.0e-09 68.2 230 31.3
MSTRG.2712 Avicennia marina HOM05D002661 ORTHO05D002786 2.3e-09 67.0 232 31.0
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 5.1e-09 65.9 160 37.5
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 5.1e-09 65.9 160 37.5
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 5.1e-09 65.9 235 28.9
Actinidia28594 Actinidia chinensis HOM05D002661 ORTHO05D002786 8.7e-09 65.1 224 27.7
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 8.7e-09 65.1 221 26.7
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 1.1e-08 64.7 224 32.1
Oeu005316.1 Olea europaea HOM05D002661 ORTHO05D002786 2.5e-08 63.5 221 28.1
Os12g0182100 Oryza sativa ssp. japonica HOM05D052999 ORTHO05D049891 2.5e-08 63.5 259 29.7
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 3.3e-08 63.2 227 28.2
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 3.3e-08 63.2 221 31.2
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 4.3e-08 62.8 127 37.0
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 4.3e-08 62.8 127 37.0
Prupe.1G366100 Prunus persica HOM05D002661 ORTHO05D002786 4.3e-08 62.8 222 27.9
vmacro21919 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 4.3e-08 62.8 219 27.9
Actinidia16982 Actinidia chinensis HOM05D002661 ORTHO05D002786 5.6e-08 62.4 135 33.3
Potri.002G023000 Populus trichocarpa HOM05D002661 ORTHO05D002786 7.3e-08 62.0 220 28.2
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 9.6e-08 61.6 222 28.4
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 1.3e-07 61.2 231 26.8
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 1.3e-07 61.2 220 27.3
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 1.6e-07 60.8 225 27.1
Peaxi162Scf00438g00717 Petunia axillaris HOM05D002661 ORTHO05D002786 1.6e-07 60.8 228 27.6
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 2.1e-07 60.5 265 29.4
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 2.8e-07 60.1 220 33.2
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.8e-07 60.1 221 29.4
CANSAT01G1513 Cannabis sativa HOM05D002661 ORTHO05D002786 4.8e-07 59.3 223 27.4
Nn5g30157 Nelumbo nucifera HOM05D002661 ORTHO05D002786 4.8e-07 59.3 221 26.2
THA.LOC104811385 Tarenaya hassleriana HOM05D002661 ORTHO05D002786 6.2e-07 58.9 224 24.6
Psat5g013240 Pisum sativum HOM05D002661 ORTHO05D002786 1.1e-06 58.2 228 26.3
Sabra05G0184300 Salix brachista HOM05D002661 ORTHO05D002786 1.1e-06 58.2 219 26.5
Lj4A25T51 Lonicera japonica HOM05D002661 ORTHO05D002786 1.4e-06 57.8 232 28.0
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 1.4e-06 57.8 231 26.4
Potri.005G238500 Populus trichocarpa HOM05D002661 ORTHO05D002786 1.4e-06 57.8 223 26.0
Gohir.D05G258600 Gossypium hirsutum HOM05D002661 ORTHO05D002786 2.4e-06 57.0 227 26.0
Solyc04g081390.4 Solanum lycopersicum HOM05D002661 ORTHO05D002786 2.4e-06 57.0 230 26.1
EL10Ac1g02294 Beta vulgaris HOM05D002661 ORTHO05D002786 3.1e-06 56.6 227 30.0
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 3.1e-06 56.6 227 28.2
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 3.1e-06 56.6 222 29.7
PGSC0003DMG400022533 Solanum tuberosum HOM05D002661 ORTHO05D002786 3.1e-06 56.6 222 27.0
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 5.3e-06 55.8 227 29.1
Nitab4.5_0006119g0020 Nicotiana tabacum HOM05D002661 ORTHO05D002786 5.3e-06 55.8 223 28.7
Peaxi162Scf00400g00048 Petunia axillaris HOM05D002661 ORTHO05D002786 5.3e-06 55.8 231 27.3
CiPaw.08G131700 Carya illinoinensis HOM05D002661 ORTHO05D002786 6.9e-06 55.5 235 29.4
ClCG05G018310 Citrullus lanatus HOM05D002661 ORTHO05D002786 6.9e-06 55.5 220 26.8
Sopen02g028700 Solanum pennellii HOM05D002661 ORTHO05D002786 6.9e-06 55.5 223 24.7
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 6.9e-06 55.5 225 27.1
Gohir.A05G257100 Gossypium hirsutum HOM05D002661 ORTHO05D002786 9.0e-06 55.1 227 26.9
Gorai.009G270100 Gossypium raimondii HOM05D002661 ORTHO05D002786 9.0e-06 55.1 227 26.4


User provided reference genes

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