Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005631 Vanilla planifolia HOM05D000649 ORTHO05D000513 3.0e-131 471.9 241 100.0
HPP92_005651 Vanilla planifolia HOM05D000649 ORTHO05D000513 3.5e-47 192.6 175 68.0
Os01g0876800 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 2.8e-28 129.8 196 46.9
Zm00001eb145950 Zea mays HOM05D000649 ORTHO05D000513 7.7e-26 121.7 195 43.1
Zm00001eb366360 Zea mays HOM05D000649 ORTHO05D000513 2.5e-24 116.7 187 42.8
TAR628G0863 Trochodendron aralioides HOM05D000649 ORTHO05D000513 7.2e-24 115.2 194 42.3
GSVIVG01037134001 Vitis vinifera HOM05D000649 ORTHO05D000513 3.6e-23 112.8 120 52.5
MBI03_g05193_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 3.0e-22 109.8 184 44.0
TAR381G1214 Trochodendron aralioides HOM05D000649 ORTHO05D000513 6.7e-22 108.6 111 53.2
Nn5g27202 Nelumbo nucifera HOM05D000649 ORTHO05D000513 8.8e-22 108.2 117 50.4
Manes.05G123400 Manihot esculenta HOM05D000649 ORTHO05D000513 2.6e-21 106.7 118 50.8
Thecc.08G165500 Theobroma cacao HOM05D000649 ORTHO05D000513 4.4e-21 105.9 170 42.4
VMungo1127G0524 Vigna mungo HOM05D000649 ORTHO05D000513 5.7e-21 105.5 103 54.4
Cfa008035 Carpinus fangiana HOM05D000649 ORTHO05D000513 7.4e-21 105.1 167 40.1
QL09p001186 Quercus lobata HOM05D000649 ORTHO05D000513 7.4e-21 105.1 120 50.0
Glyma.12G002800 Glycine max HOM05D000649 ORTHO05D000513 9.7e-21 104.8 126 46.8
MBI06_g32145_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 9.7e-21 104.8 110 53.6
Glyma.09G234200 Glycine max HOM05D000649 ORTHO05D000513 1.3e-20 104.4 173 38.2
Haze_14009 Corylus avellana HOM05D000649 ORTHO05D000513 1.7e-20 104.0 101 53.5
CiPaw.04G008500 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.8e-20 103.2 120 49.2
Phvul.011G003400 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 2.8e-20 103.2 103 53.4
Nitab4.5_0007117g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 3.7e-20 102.8 112 50.0
Potri.019G068400 Populus trichocarpa HOM05D000649 ORTHO05D000513 3.7e-20 102.8 110 50.0
TAR376G1146 Trochodendron aralioides HOM05D000649 ORTHO05D000513 3.7e-20 102.8 185 37.3
Potri.013G094400 Populus trichocarpa HOM05D000649 ORTHO05D000513 4.8e-20 102.4 117 49.6
Peaxi162Scf00078g01146 Petunia axillaris HOM05D000649 ORTHO05D000513 3.1e-19 99.8 120 46.7
Duzib177G1019 Durio zibethinus HOM05D000649 ORTHO05D000513 4.1e-19 99.4 120 50.0
Hma1.2p1_0016F.1_g011020 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 7.0e-19 98.6 124 46.8
Sed0021359 Sechium edule HOM05D000649 ORTHO05D000513 7.0e-19 98.6 123 47.2
CiPaw.03G012200 Carya illinoinensis HOM05D000649 ORTHO05D000513 1.2e-18 97.8 124 46.8
Nitab4.5_0000079g0090 Nicotiana tabacum HOM05D000649 ORTHO05D000513 1.2e-18 97.8 114 48.2
Dinv37398 Davidia involucrata HOM05D000649 ORTHO05D000513 1.6e-18 97.4 123 47.2
Psat7g152240 Pisum sativum HOM05D000649 ORTHO05D000513 1.6e-18 97.4 125 47.2
PGSC0003DMG400003484 Solanum tuberosum HOM05D000649 ORTHO05D000513 1.6e-18 97.4 116 56.0
arahy.Tifrunner.gnm1.ann1.27MXSE Arachis hypogaea HOM05D000649 ORTHO05D000513 2.0e-18 97.1 132 43.9
Sabra13G0080800 Salix brachista HOM05D000649 ORTHO05D000513 2.0e-18 97.1 116 50.0
Medtr4g035310 Medicago truncatula HOM05D000649 ORTHO05D000513 7.7e-18 95.1 124 46.0
DCAR_014055 Daucus carota HOM05D000649 ORTHO05D000513 1.7e-17 94.0 176 40.9
Solyc11g044470.3 Solanum lycopersicum HOM05D000649 ORTHO05D000513 3.8e-17 92.8 117 55.6
Dinv22061 Davidia involucrata HOM05D000649 ORTHO05D000513 6.5e-17 92.0 65 66.2
TWI12G0184 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 6.5e-17 92.0 120 46.7
arahy.Tifrunner.gnm1.ann1.94A4PA Arachis hypogaea HOM05D000649 ORTHO05D000513 1.1e-16 91.3 85 54.1
Duzib116G0040 Durio zibethinus HOM05D000649 ORTHO05D000513 1.1e-16 91.3 174 39.7
TWI75G0301 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.5e-16 90.9 120 45.8
Gohir.A03G080800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 2.5e-16 90.1 119 50.4
Gohir.D02G103600 Gossypium hirsutum HOM05D000649 ORTHO05D000513 2.5e-16 90.1 119 50.4
Gorai.005G117700 Gossypium raimondii HOM05D000649 ORTHO05D000513 2.5e-16 90.1 119 50.4
Atru.chr13.2590 Acer truncatum HOM05D000649 ORTHO05D000513 3.2e-16 89.7 114 43.9
Sopen11g020040 Solanum pennellii HOM05D000649 ORTHO05D000513 3.2e-16 89.7 117 54.7
Lalb_Chr19g0140441 Lupinus albus HOM05D000649 ORTHO05D000513 7.2e-16 88.6 107 51.4
Lalb_Chr01g0000161 Lupinus albus HOM05D000649 ORTHO05D000513 2.1e-15 87.0 119 44.5
CSS0040374 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 3.6e-15 86.3 139 43.2
DCAR_001181 Daucus carota HOM05D000649 ORTHO05D000513 3.6e-15 86.3 160 37.5
Sabra19G0081900 Salix brachista HOM05D000649 ORTHO05D000513 3.6e-15 86.3 104 47.1
COL.COLO4_25055 Corchorus olitorius HOM05D000649 ORTHO05D000513 4.7e-15 85.9 149 46.3
CDE05G0372 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 1.8e-14 84.0 178 35.4
CDE05G1231 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 1.8e-14 84.0 109 45.0
Prupe.8G001400 Prunus persica HOM05D000649 ORTHO05D000513 4.0e-14 82.8 102 49.0
ClCG08G001810 Citrullus lanatus HOM05D000649 ORTHO05D000513 6.7e-14 82.0 124 41.1
Actinidia23300 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.5e-13 80.9 180 36.1
Cc10_g16160 Coffea canephora HOM05D000649 ORTHO05D000513 2.6e-13 80.1 116 42.2
Ciclev10021520m.g Citrus clementina HOM05D000649 ORTHO05D000513 3.3e-13 79.7 106 45.3
MD05G1000700 Malus domestica HOM05D000649 ORTHO05D000513 9.7e-13 78.2 188 33.5
Lj3g0017808 Lotus japonicus HOM05D000649 ORTHO05D000513 2.2e-12 77.0 88 51.1
Migut.C01403 Erythranthe guttata HOM05D000649 ORTHO05D000513 6.3e-12 75.5 120 41.7
MD00G1161300 Malus domestica HOM05D000649 ORTHO05D000513 1.4e-11 74.3 66 60.6
MELO3C022120.2 Cucumis melo HOM05D000649 ORTHO05D000513 2.4e-11 73.6 120 40.8
CsaV3_5G039420 Cucumis sativus L. HOM05D000649 ORTHO05D000513 2.4e-11 73.6 120 40.8
MSTRG.25505 Avicennia marina HOM05D000649 ORTHO05D000513 3.1e-11 73.2 126 38.1
BcaC05g27803 Brassica carinata HOM05D000649 ORTHO05D000513 3.1e-11 73.2 163 36.8
C05p38020 Brassica napus HOM05D000649 ORTHO05D000513 3.1e-11 73.2 163 36.8
A05p24270 Brassica napus HOM05D000649 ORTHO05D000513 1.6e-10 70.9 163 36.2
Eucgr.F04089 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.6e-10 70.9 135 40.7
Gohir.A08G229300 Gossypium hirsutum HOM05D000649 ORTHO05D000513 1.6e-10 70.9 118 42.4
Sabra04G0083400 Salix brachista HOM05D000649 ORTHO05D000513 2.0e-10 70.5 114 38.6
Oeu028618.1 Olea europaea HOM05D000649 ORTHO05D000513 2.7e-10 70.1 119 40.3
ECA247G3339 Erigeron canadensis HOM05D000649 ORTHO05D000513 4.5e-10 69.3 134 38.8
Gohir.D08G249600 Gossypium hirsutum HOM05D000649 ORTHO05D000513 5.9e-10 68.9 117 41.9
Gorai.004G266200 Gossypium raimondii HOM05D000649 ORTHO05D000513 5.9e-10 68.9 117 41.9
HanXRQChr04g0102501 Helianthus annuus HOM05D000649 ORTHO05D000513 7.7e-10 68.6 132 40.2
HanXRQChr12g0369231 Helianthus annuus HOM05D000649 ORTHO05D000513 1.0e-09 68.2 127 38.6
CARHR032900 Cardamine hirsuta HOM05D000649 ORTHO05D000513 1.7e-09 67.4 165 37.6
BolC5t32533H Brassica oleracea HOM05D000649 ORTHO05D000513 2.2e-09 67.0 171 35.7
Aa31LG6G7940 Aethionema arabicum HOM05D000649 ORTHO05D000513 3.8e-09 66.2 164 36.0
Lsat_1_v5_gn_1_24581 Lactuca sativa HOM05D000649 ORTHO05D000513 6.5e-09 65.5 131 38.9
THA.LOC104815766 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 8.5e-09 65.1 163 34.4
ATR1089G115 Amborella trichopoda HOM05D000649 ORTHO05D000513 1.9e-08 63.9 121 40.5
AT1G33470 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 1.9e-08 63.9 163 34.4
FAN20G3123 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.5e-08 63.5 130 36.9
Thhalv10008315m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 3.2e-08 63.2 165 35.8
PGR102G1365 Punica granatum HOM05D000649 ORTHO05D000513 3.2e-08 63.2 172 33.1
Carub.0001s3165 Capsella rubella HOM05D000649 ORTHO05D000513 5.5e-08 62.4 158 34.2
DCAR_010115 Daucus carota HOM05D000320 ORTHO05D000513 7.2e-08 62.0 118 38.1
Cpa.g.sc249.13 Carica papaya HOM05D000649 ORTHO05D000513 9.4e-08 61.6 55 60.0
BcaB03g13698 Brassica carinata HOM05D000649 ORTHO05D000513 1.2e-07 61.2 145 36.6
BraA05t21319Z Brassica rapa HOM05D000649 ORTHO05D000513 1.2e-07 61.2 183 32.2
SalBow7G1929 Salvia bowleyana HOM05D000649 ORTHO05D000513 1.2e-07 61.2 141 36.2
RcHm_v2.0_Chr6g0249431 Rosa chinensis HOM05D000649 ORTHO05D000513 2.7e-07 60.1 197 32.0
Aqoxy6G00037 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 3.6e-07 59.7 124 46.8
FvH4_2g00160 Fragaria vesca HOM05D000649 ORTHO05D000513 3.6e-07 59.7 126 36.5
FAN24G3476 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.6e-07 59.7 126 36.5
vmacro00955 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 1.8e-06 57.4 125 43.2
AL1G47850 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 3.0e-06 56.6 164 33.5


User provided reference genes

Program Settings