Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.2e-305 1052.4 536 100.0
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.3e-198 696.8 544 66.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.6e-196 689.9 456 73.5
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 2.3e-195 686.0 496 67.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.9e-194 682.9 421 76.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.9e-194 682.9 543 65.9
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.5e-194 682.6 543 65.4
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.5e-194 682.6 440 74.3
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 5.6e-194 681.4 532 65.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.8e-193 679.1 523 66.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 4.0e-192 675.2 531 64.8
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.2e-191 673.7 529 64.7
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 1.2e-191 673.7 514 66.0
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.2e-191 673.7 424 74.5
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.0e-191 672.9 513 66.5
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 4.4e-191 671.8 518 65.6
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.2e-190 669.5 522 65.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.2e-190 669.5 418 76.1
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 3.8e-190 668.7 524 66.2
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 8.4e-190 667.5 427 74.0
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 8.4e-190 667.5 531 64.6
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 1.1e-189 667.2 425 74.1
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.1e-189 667.2 435 73.1
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-189 666.4 434 73.5
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.9e-189 666.4 502 67.1
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.1e-189 665.2 516 65.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 7.1e-189 664.5 421 75.3
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 7.1e-189 664.5 522 63.6
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.2e-188 663.7 453 70.6
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.2e-188 663.7 424 74.3
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.6e-188 663.3 528 64.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.6e-188 663.3 536 64.0
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.6e-188 663.3 508 65.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.1e-188 662.9 444 71.6
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 2.1e-188 662.9 481 67.2
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 2.7e-188 662.5 516 65.5
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 6.0e-188 661.4 423 72.6
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 6.0e-188 661.4 522 65.7
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.0e-187 660.6 535 63.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.0e-187 660.6 536 63.6
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.3e-187 660.2 427 72.8
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 2.3e-187 659.4 529 62.8
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 3.9e-187 658.7 429 73.7
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 5.1e-187 658.3 516 65.7
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.6e-187 657.9 522 64.2
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 8.6e-187 657.5 502 66.9
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.5e-186 656.8 438 72.6
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.9e-186 656.4 510 65.9
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.5e-186 656.0 432 72.7
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.3e-186 655.6 502 66.7
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.3e-186 655.6 503 66.2
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 3.3e-186 655.6 421 74.8
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 4.3e-186 655.2 515 64.3
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 9.6e-186 654.1 503 64.6
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.8e-185 652.5 524 63.5
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 2.8e-185 652.5 518 64.3
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 3.6e-185 652.1 397 76.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.1e-185 651.0 426 72.3
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.4e-184 650.2 432 71.5
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.4e-184 650.2 432 71.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.4e-184 650.2 486 68.1
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.4e-184 650.2 487 67.6
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.8e-184 649.8 422 73.7
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 3.1e-184 649.0 484 68.2
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 5.2e-184 648.3 487 67.6
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 8.9e-184 647.5 535 63.0
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.6e-183 646.0 446 70.9
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 3.4e-183 645.6 433 72.3
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.4e-183 645.6 507 63.9
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 4.4e-183 645.2 419 73.0
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 5.8e-183 644.8 429 72.3
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 5.8e-183 644.8 442 70.4
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 1.3e-182 643.7 467 67.2
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.7e-182 643.3 514 64.6
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 2.9e-182 642.5 512 65.0
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 3.8e-182 642.1 427 71.4
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 3.8e-182 642.1 464 68.1
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 3.8e-182 642.1 464 68.1
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.4e-181 640.2 503 64.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.4e-181 640.2 503 64.0
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-181 639.8 489 65.4
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.9e-181 639.8 489 65.4
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.4e-181 639.4 503 64.0
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.2e-181 638.6 452 68.8
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.2e-181 638.6 452 68.8
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.2e-181 638.6 452 68.8
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.2e-180 637.1 480 68.5
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-180 636.7 425 69.6
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.1e-180 636.3 533 60.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.1e-180 636.3 579 59.8
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 2.7e-180 636.0 435 70.8
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.5e-180 635.6 493 64.7
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.0e-179 634.0 460 68.3
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.0e-179 634.0 429 72.0
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 5.1e-179 631.7 496 63.9
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.3e-178 629.0 511 64.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.2e-177 624.8 495 65.3
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.1e-176 622.5 495 65.3
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 2.6e-175 619.4 501 63.1
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.6e-175 619.4 430 71.9
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.9e-175 617.5 441 69.8
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 2.9e-174 615.9 612 54.7
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.9e-170 603.2 432 69.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 5.8e-167 591.7 526 60.1
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.8e-166 589.0 496 61.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.4e-165 586.3 489 63.2
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 5.5e-165 585.1 523 61.0
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 9.3e-165 584.3 433 65.1
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 7.9e-164 581.3 486 62.8
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.0e-163 580.9 453 64.0
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 3.9e-163 578.9 578 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.7e-163 578.2 498 57.6
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.9e-162 576.6 446 64.1
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 9.6e-162 574.3 426 62.0
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.4e-160 570.5 493 57.4
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.9e-160 568.2 417 65.9
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 9.0e-160 567.8 446 65.0
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.5e-159 565.5 466 64.4
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.5e-157 559.7 366 71.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.0e-156 555.1 556 56.7
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-153 547.0 589 53.1
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.3e-152 542.0 528 57.2
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.7e-150 537.0 618 51.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.9e-149 533.5 529 56.5
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 4.6e-148 528.9 359 70.5
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.8e-147 526.9 511 55.8
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.3e-147 526.6 396 66.4
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.0e-147 526.2 540 55.4
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.2e-143 514.2 402 63.4
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.2e-143 514.2 364 67.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 3.8e-142 509.2 498 55.2
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 3.2e-141 506.1 366 64.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.3e-137 494.2 490 54.9
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 4.5e-135 485.7 362 66.0
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.8e-134 482.6 483 55.1
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.7e-132 476.5 446 58.3
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.8e-131 473.8 311 74.6
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.2e-131 472.2 404 63.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.7e-131 471.9 400 61.0
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.7e-129 466.1 463 56.2
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.8e-129 465.7 314 72.6
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.7e-126 457.2 388 60.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.0e-126 455.7 379 64.1
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.1e-124 450.3 447 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.8e-121 439.1 356 58.7
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.4e-114 416.4 383 58.5
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 9.2e-104 381.7 371 57.4
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.8e-100 370.2 427 52.5
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 8.3e-97 358.6 454 44.3
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.1e-93 348.2 209 76.6
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 7.1e-72 275.8 149 81.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.3e-69 266.5 294 52.7
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.0e-67 260.0 290 53.8
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.7e-63 247.3 193 60.1
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.6e-61 239.6 142 77.5
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.1e-60 237.7 404 33.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.4e-59 235.0 165 70.9
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.8e-59 234.6 160 62.5
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.6e-58 230.7 341 46.3
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 4.5e-58 229.9 154 71.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-54 218.4 468 32.7
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 9.6e-45 185.7 104 78.8
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 2.1e-44 184.5 210 55.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.8e-20 104.4 291 29.6
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 2.0e-18 98.2 205 29.8
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.6e-18 97.8 126 49.2
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 2.9e-17 94.4 48 81.2
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 3.8e-17 94.0 49 85.7
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 8.5e-17 92.8 51 78.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 5.3e-11 73.6 63 55.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.0e-11 73.2 39 87.2
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 3.5e-10 70.9 106 38.7


User provided reference genes

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