Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 2.1e-77 292.4 157 100.0
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 5.7e-62 241.1 151 80.1
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.8e-61 238.8 157 79.6
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 6.3e-61 237.7 157 77.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.8e-60 236.1 154 77.9
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.8e-60 236.1 158 77.2
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.3e-60 234.6 158 77.2
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 9.0e-60 233.8 158 75.3
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.2e-59 233.4 158 77.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-59 233.0 158 76.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.6e-59 232.3 154 75.3
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 5.9e-59 231.1 146 80.1
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 7.6e-59 230.7 142 82.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.0e-58 230.3 157 75.8
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.0e-58 230.3 157 75.8
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.0e-58 230.3 159 74.2
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.3e-58 229.9 152 77.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.2e-58 229.2 152 76.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.9e-58 228.8 142 80.3
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 5.0e-58 228.0 145 80.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 5.0e-58 228.0 141 82.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 5.0e-58 228.0 141 82.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 8.5e-58 227.3 142 80.3
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.4e-57 226.5 153 73.2
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.9e-57 226.1 154 73.4
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.9e-57 226.1 159 71.1
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 4.2e-57 224.9 157 74.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 4.2e-57 224.9 157 75.2
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.5e-57 224.6 153 74.5
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 5.5e-57 224.6 150 74.0
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 9.3e-57 223.8 152 74.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 9.3e-57 223.8 151 76.2
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.2e-56 223.4 139 79.9
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.6e-56 223.0 139 79.9
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.1e-56 222.6 155 74.2
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.1e-56 222.6 153 73.2
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.7e-56 222.2 142 80.3
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.7e-56 222.2 147 75.5
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 3.6e-56 221.9 156 73.1
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 4.6e-56 221.5 140 77.9
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.9e-56 220.7 156 74.4
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.9e-56 220.7 156 74.4
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 7.9e-56 220.7 156 74.4
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 7.9e-56 220.7 138 80.4
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.0e-55 220.3 186 64.0
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.0e-55 220.3 158 74.7
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.3e-55 219.9 139 78.4
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.3e-55 219.9 143 80.4
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.3e-55 219.2 138 80.4
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.0e-55 218.8 139 76.3
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.9e-55 218.4 143 76.9
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 6.7e-55 217.6 150 72.0
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 8.7e-55 217.2 138 78.3
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 8.7e-55 217.2 158 73.4
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 8.7e-55 217.2 133 81.2
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.5e-54 216.5 139 77.7
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 2.5e-54 215.7 142 74.6
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-54 215.7 140 75.7
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.3e-54 215.3 152 73.0
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 5.7e-54 214.5 139 77.7
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.7e-54 214.5 141 77.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.3e-53 213.4 138 76.1
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-53 213.4 141 73.8
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.3e-53 213.4 141 75.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-53 213.4 139 75.5
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.2e-53 212.6 137 78.8
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.8e-53 212.2 141 74.5
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.8e-53 212.2 138 75.4
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.7e-53 211.8 146 71.9
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 3.7e-53 211.8 147 72.1
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-53 211.5 141 74.5
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 4.8e-53 211.5 157 70.7
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-53 211.1 141 72.3
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-53 211.1 141 71.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-53 211.1 141 72.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 8.2e-53 210.7 146 72.6
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 8.2e-53 210.7 146 71.9
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 8.2e-53 210.7 146 71.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-52 210.3 138 74.6
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.8e-52 209.5 152 71.7
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.8e-52 209.5 152 71.7
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.4e-52 209.1 137 75.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.4e-52 209.1 137 75.9
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-52 209.1 141 72.3
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.1e-52 208.8 137 75.2
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 4.1e-52 208.4 150 70.7
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.0e-51 206.1 138 74.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.9e-51 204.5 137 73.0
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.9e-51 204.5 141 73.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.0e-50 203.8 156 69.2
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.2e-50 202.6 141 73.0
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.2e-50 202.6 141 73.0
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.9e-50 202.2 192 57.8
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.9e-50 202.2 141 73.0
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.9e-50 202.2 147 70.7
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 5.0e-50 201.4 158 69.0
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 6.5e-50 201.1 158 69.6
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.4e-49 199.9 125 80.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-49 199.9 130 79.2
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.9e-49 199.5 131 77.1
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 2.5e-49 199.1 162 66.0
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 2.5e-49 199.1 208 54.3
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 4.2e-49 198.4 121 81.8
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 4.2e-49 198.4 157 66.2
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 5.5e-49 198.0 141 71.6
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 2.7e-48 195.7 133 76.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.1e-48 194.5 127 78.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-47 193.7 141 68.1
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.0e-47 193.7 210 51.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.8e-47 193.0 186 57.5
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.3e-47 192.6 129 75.2
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.1e-47 191.4 141 66.7
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.7e-47 191.0 226 48.7
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.8e-47 190.7 148 66.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.1e-46 190.3 245 49.0
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.0e-46 189.5 138 71.7
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-46 189.1 141 66.7
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 3.7e-45 185.3 141 68.8
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 6.3e-45 184.5 115 79.1
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 6.3e-45 184.5 115 79.1
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 8.2e-45 184.1 115 80.9
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-44 183.3 115 79.1
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.4e-44 183.3 153 64.7
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-44 183.0 115 78.3
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-44 182.6 115 78.3
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.1e-44 182.2 115 79.1
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-43 179.9 115 77.4
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-43 179.1 115 76.5
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-43 178.7 115 76.5
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 2.2e-42 176.0 137 61.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 3.8e-42 175.3 143 59.4
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-41 173.3 114 74.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.2e-41 171.0 110 75.5
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.2e-41 171.0 110 75.5
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.6e-40 169.9 147 58.5
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 4.7e-40 168.3 141 56.0
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.8e-37 159.1 160 56.2
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.3e-34 150.2 92 82.6
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.5e-33 146.7 109 70.6
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.2e-32 143.7 87 83.9
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.8e-29 132.5 200 42.0
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.7e-29 132.1 101 73.3
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.7e-27 125.9 84 71.4
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 3.5e-27 125.6 149 43.6
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 5.9e-27 124.8 135 50.4
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 4.2e-25 118.6 136 43.4
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 8.0e-24 114.4 71 83.1
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 8.0e-24 114.4 71 83.1
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.0e-23 114.0 70 78.6
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 5.2e-23 111.7 71 80.3
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 9.8e-22 107.5 73 68.5
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-20 103.6 65 81.5
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.8e-20 103.2 64 79.7
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.5e-18 94.7 68 75.0
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 4.2e-17 92.0 59 74.6
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.2e-17 92.0 68 73.5
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.5e-17 91.7 65 69.2
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.1e-16 88.2 65 63.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 5.2e-15 85.1 127 36.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.4e-14 82.4 133 32.3
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 5.7e-14 81.6 70 62.9
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.7e-13 80.1 49 71.4
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.6e-11 73.6 53 62.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.9e-09 66.6 49 67.3
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.9e-09 66.6 49 67.3
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.4e-07 60.5 41 73.2


User provided reference genes

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