Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 2.2e-182 642.1 318 100.0
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.8e-83 313.5 330 52.1
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 5.8e-82 308.5 325 52.0
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 4.6e-79 298.9 328 51.5
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 1.1e-77 294.3 323 49.2
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 3.3e-77 292.7 322 49.4
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 7.4e-77 291.6 323 49.8
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 2.2e-76 290.0 322 49.1
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 2.8e-76 289.7 330 49.1
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 3.7e-76 289.3 327 48.6
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 6.3e-76 288.5 322 50.0
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 6.3e-76 288.5 319 50.2
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.1e-75 287.7 330 51.2
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 6.9e-75 285.0 323 48.0
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 9.0e-75 284.6 322 48.4
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 1.2e-74 284.3 323 48.3
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 1.5e-74 283.9 323 49.8
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 1.5e-74 283.9 326 47.9
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 1.5e-74 283.9 326 47.9
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 2.6e-74 283.1 321 49.5
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 5.9e-74 282.0 320 50.6
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 7.7e-74 281.6 325 47.7
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 7.7e-74 281.6 323 48.0
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 7.7e-74 281.6 326 47.5
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 1.0e-73 281.2 321 50.2
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.7e-73 280.4 326 48.2
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 2.2e-73 280.0 323 48.0
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 2.9e-73 279.6 322 48.4
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 2.9e-73 279.6 324 49.1
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 3.8e-73 279.3 327 48.6
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 3.8e-73 279.3 322 46.9
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 8.5e-73 278.1 323 49.8
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 1.1e-72 277.7 332 49.1
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 1.1e-72 277.7 326 49.7
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 1.1e-72 277.7 322 47.2
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 1.9e-72 276.9 324 48.8
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 2.5e-72 276.6 322 46.9
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 2.5e-72 276.6 322 46.3
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 4.2e-72 275.8 324 50.0
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 7.2e-72 275.0 323 46.7
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 1.2e-71 274.2 319 47.6
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 1.6e-71 273.9 323 48.3
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 2.1e-71 273.5 325 49.2
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 6.1e-71 271.9 324 46.6
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 1.0e-70 271.2 322 47.8
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 2.3e-70 270.0 318 50.0
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 5.1e-70 268.9 323 46.7
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 5.1e-70 268.9 322 47.5
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 8.8e-70 268.1 341 45.2
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 1.1e-69 267.7 321 47.7
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 2.0e-69 266.9 322 46.9
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 3.3e-69 266.2 318 45.9
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 3.3e-69 266.2 330 48.8
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 3.3e-69 266.2 319 46.7
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 3.3e-69 266.2 327 46.2
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 5.7e-69 265.4 322 47.2
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 9.7e-69 264.6 322 48.4
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 2.8e-68 263.1 298 47.0
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 3.1e-67 259.6 346 45.7
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 6.9e-67 258.5 318 45.3
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 6.9e-67 258.5 320 46.9
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 9.1e-67 258.1 323 45.8
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 1.2e-66 257.7 319 45.1
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 4.5e-66 255.8 327 46.8
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 2.2e-65 253.4 370 41.9
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 2.9e-65 253.1 324 44.4
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 5.0e-65 252.3 321 46.7
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 9.4e-64 248.1 319 45.1
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 9.4e-64 248.1 318 45.9
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 1.2e-63 247.7 319 45.8
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 2.1e-63 246.9 325 44.6
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 2.7e-63 246.5 329 44.4
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 7.9e-63 245.0 321 45.2
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 7.9e-63 245.0 336 43.5
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 7.9e-63 245.0 337 45.4
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 1.4e-62 244.2 319 45.1
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 3.9e-62 242.7 325 44.3
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 3.9e-62 242.7 323 43.7
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 5.1e-62 242.3 325 43.7
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.1e-62 242.3 344 42.4
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 5.1e-62 242.3 397 39.3
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.1e-61 241.1 325 43.4
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.0e-61 240.4 322 44.1
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 3.3e-61 239.6 327 44.0
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 4.4e-61 239.2 321 44.9
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 7.4e-61 238.4 319 44.2
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 8.2e-60 235.0 319 43.9
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.4e-59 234.2 319 43.6
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 2.4e-59 233.4 322 44.1
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 3.1e-59 233.0 319 43.3
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.8e-57 226.1 296 44.9
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 6.5e-57 225.3 313 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 8.5e-57 224.9 340 38.8
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 8.5e-57 224.9 326 41.4
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 3.6e-55 219.5 289 44.6
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 4.7e-55 219.2 294 43.5
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 1.5e-53 214.2 240 49.2
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 2.6e-53 213.4 318 41.8
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 8.2e-52 208.4 325 40.6
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 9.1e-51 204.9 247 47.4
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 1.6e-50 204.1 236 49.2
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 4.5e-50 202.6 285 43.5
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.3e-49 201.1 333 39.0
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 8.5e-49 198.4 334 39.5
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 3.2e-48 196.4 331 39.6
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 5.5e-48 195.7 328 38.7
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 8.0e-47 191.8 260 45.8
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 8.0e-47 191.8 276 42.8
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.0e-46 191.4 271 44.3
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 1.0e-46 191.4 274 42.7
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.3e-46 190.3 262 43.1
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 5.7e-45 185.7 332 36.4
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 2.4e-43 180.3 235 43.8
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.1e-43 179.9 292 39.4
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 7.7e-42 175.3 164 55.5
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 1.3e-41 174.5 319 39.2
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 2.2e-41 173.7 323 35.6
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 6.5e-41 172.2 280 40.7
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.6e-34 151.0 231 41.6
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 1.5e-32 144.4 201 40.8
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 2.0e-29 134.0 243 37.9
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 2.3e-25 120.6 255 33.7
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 8.0e-15 85.5 55 69.1
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 6.6e-09 65.9 63 54.0
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 8.6e-09 65.5 53 58.5
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 1.1e-06 58.5 46 58.7
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 6.8e-06 55.8 49 59.2


User provided reference genes

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