Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.6e-106 389.4 198 100.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 2.4e-33 146.4 215 39.1
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.3e-31 140.6 208 38.0
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.9e-30 136.7 205 40.5
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.9e-30 136.7 205 39.0
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 4.2e-30 135.6 205 41.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 5.5e-30 135.2 210 38.6
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.2e-29 134.0 196 40.3
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 4.7e-29 132.1 206 36.4
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 6.1e-29 131.7 208 37.5
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 8.0e-29 131.3 208 35.6
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.0e-28 131.0 205 37.1
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 2.3e-28 129.8 206 37.4
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.1e-27 127.5 209 36.8
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.5e-27 127.1 208 41.8
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 2.0e-27 126.7 201 37.3
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 2.0e-27 126.7 205 36.6
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.3e-27 125.9 198 39.9
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 5.7e-27 125.2 206 35.4
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 7.5e-27 124.8 201 38.8
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 7.5e-27 124.8 211 34.1
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 2.8e-26 122.9 208 37.5
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.8e-26 122.9 205 37.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 3.7e-26 122.5 183 40.4
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 3.7e-26 122.5 212 36.8
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 3.7e-26 122.5 210 36.2
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.7e-26 122.5 202 40.6
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 3.7e-26 122.5 203 38.4
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 6.3e-26 121.7 198 39.4
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.1e-25 120.9 197 39.1
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.1e-25 120.9 203 36.9
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.1e-25 120.9 200 38.5
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-25 120.9 195 39.5
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.4e-25 120.6 210 34.8
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.4e-25 120.6 210 34.8
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 2.4e-25 119.8 196 38.8
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 4.1e-25 119.0 179 40.2
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 4.1e-25 119.0 205 37.1
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 4.1e-25 119.0 217 35.5
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 5.3e-25 118.6 203 36.9
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 5.3e-25 118.6 199 37.7
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 5.3e-25 118.6 199 37.7
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 5.3e-25 118.6 202 40.6
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 5.3e-25 118.6 222 38.7
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 7.0e-25 118.2 200 37.5
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 7.0e-25 118.2 200 37.5
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 9.1e-25 117.9 207 37.2
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 1.6e-24 117.1 215 34.0
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.6e-24 117.1 203 35.0
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.6e-24 117.1 197 38.6
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 2.0e-24 116.7 197 36.5
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.0e-24 116.7 193 37.8
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.7e-24 116.3 217 34.6
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 3.5e-24 115.9 200 37.5
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 5.9e-24 115.2 201 35.8
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 5.9e-24 115.2 217 34.1
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 7.7e-24 114.8 186 39.2
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.7e-24 114.8 199 35.7
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.0e-23 114.4 214 36.9
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 3.8e-23 112.5 202 39.6
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 6.5e-23 111.7 189 37.0
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.5e-22 110.5 208 35.1
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.5e-22 109.8 211 36.5
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 4.2e-22 109.0 207 37.7
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 5.5e-22 108.6 211 34.6
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 7.2e-22 108.2 202 36.1
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 9.4e-22 107.8 207 36.2
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 1.2e-21 107.5 189 33.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.6e-21 107.1 208 36.5
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.0e-20 104.4 202 34.7
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.8e-20 103.6 190 33.7
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.8e-20 103.6 199 38.2
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.8e-20 103.6 203 34.0
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.8e-20 103.6 192 35.4
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.3e-20 103.2 200 33.0
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.3e-20 103.2 192 35.4
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.2e-19 100.9 190 33.7
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 2.6e-19 99.8 176 37.5
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 3.4e-19 99.4 189 33.3
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 5.7e-19 98.6 183 32.2
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 9.8e-19 97.8 196 31.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 9.8e-19 97.8 188 33.5
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.3e-18 97.4 163 32.5
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.2e-18 96.7 191 34.6
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 2.2e-18 96.7 195 35.4
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 8.3e-18 94.7 202 33.2
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.8e-17 93.6 191 34.6
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.8e-17 93.6 206 33.0
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 2.4e-17 93.2 158 32.9
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 9.1e-17 91.3 205 34.1
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 2.0e-16 90.1 219 30.6
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.0e-16 90.1 185 33.0
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 3.5e-16 89.4 195 31.3
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 4.5e-16 89.0 169 34.3
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 1.7e-15 87.0 219 30.1
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.9e-15 86.3 181 35.9
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 2.9e-15 86.3 184 31.5
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 8.5e-15 84.7 165 33.9
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.5e-14 84.0 205 31.2
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.2e-14 82.4 199 33.2
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 6.1e-13 78.6 176 31.2
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 8.0e-13 78.2 186 30.1
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 1.0e-12 77.8 198 31.8
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 2.6e-11 73.2 126 36.5
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.5e-11 71.6 185 27.6
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.4e-09 66.6 135 34.1
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 3.1e-09 66.2 172 29.7
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 3.1e-09 66.2 167 29.9
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 4.1e-09 65.9 171 29.2
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 5.4e-09 65.5 113 35.4
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 1.2e-08 64.3 135 31.9
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.2e-08 64.3 167 27.5
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.2e-08 64.3 97 36.1
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.6e-08 63.9 118 33.9
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.6e-08 63.9 167 26.3
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.5e-08 62.8 110 36.4
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.5e-08 62.4 112 37.5
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 5.9e-08 62.0 152 32.2
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 7.7e-08 61.6 139 30.2
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 1.0e-07 61.2 128 31.2
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.0e-07 61.2 124 35.5
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.3e-07 60.8 122 35.2
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-07 60.8 112 36.6
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.3e-07 60.8 130 30.8
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.7e-07 60.5 128 31.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 2.3e-07 60.1 114 37.7
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.3e-07 60.1 112 33.9
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.9e-07 59.7 117 32.5
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.8e-07 59.3 126 33.3
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.8e-07 59.3 109 32.1
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.0e-07 58.9 111 36.9
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.0e-07 58.9 120 32.5
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 6.6e-07 58.5 152 32.2
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 6.6e-07 58.5 131 32.8
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 6.6e-07 58.5 165 27.3
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 8.6e-07 58.2 116 32.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 8.6e-07 58.2 112 34.8
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 8.6e-07 58.2 130 32.3
Os01g0106600 Oryza sativa ssp. japonica HOM05D041344 ORTHO05D037183 8.6e-07 58.2 110 39.1
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-06 57.8 99 32.3
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.9e-06 57.0 139 30.9
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.9e-06 57.0 134 30.6
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.9e-06 57.0 132 27.3
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.5e-06 56.6 121 28.9
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.3e-06 56.2 145 28.3
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.3e-06 55.8 128 29.7
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 5.6e-06 55.5 119 30.3
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 5.6e-06 55.5 114 33.3
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.6e-06 55.5 124 29.8
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 5.6e-06 55.5 112 33.0
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 5.6e-06 55.5 115 33.0
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 5.6e-06 55.5 126 30.2
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 5.6e-06 55.5 121 33.1
Zm00001eb334230 Zea mays HOM05D041344 ORTHO05D037183 5.6e-06 55.5 136 33.8
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 7.3e-06 55.1 117 30.8
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 7.3e-06 55.1 126 28.6
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 7.3e-06 55.1 116 31.9
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 9.5e-06 54.7 108 29.6
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 9.5e-06 54.7 107 32.7
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 9.5e-06 54.7 121 32.2


User provided reference genes

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