Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.9e-160 568.2 303 100.0
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 8.9e-80 301.2 287 61.0
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.4e-79 298.9 285 58.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.4e-79 298.9 286 60.5
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 5.8e-79 298.5 224 68.3
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 7.5e-79 298.1 287 60.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 9.8e-79 297.7 223 70.0
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.3e-78 297.4 300 59.7
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.7e-78 297.0 289 59.5
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 2.2e-78 296.6 286 60.5
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 3.7e-78 295.8 283 60.1
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 4.9e-78 295.4 206 72.8
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 4.9e-78 295.4 297 58.9
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 4.9e-78 295.4 224 67.9
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 1.4e-77 293.9 286 59.4
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.4e-77 293.9 287 59.9
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 3.2e-77 292.7 298 58.7
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.1e-77 292.4 294 56.8
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 5.4e-77 292.0 219 67.1
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.0e-77 291.6 302 59.6
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 7.0e-77 291.6 295 57.6
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.0e-77 291.6 288 58.3
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 7.0e-77 291.6 213 71.4
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 7.0e-77 291.6 233 65.7
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 7.0e-77 291.6 297 57.2
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 7.0e-77 291.6 214 70.6
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.2e-77 291.2 285 58.6
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 9.2e-77 291.2 298 58.4
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.2e-77 291.2 293 57.7
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 9.2e-77 291.2 302 58.3
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 9.2e-77 291.2 286 57.3
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 9.2e-77 291.2 290 57.2
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 9.2e-77 291.2 303 57.4
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.2e-76 290.8 207 72.5
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 1.2e-76 290.8 280 60.0
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-76 290.8 302 57.3
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-76 290.4 293 57.0
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.6e-76 290.4 216 68.1
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.6e-76 290.4 232 65.5
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 2.0e-76 290.0 213 68.5
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 2.0e-76 290.0 292 59.6
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.0e-76 290.0 280 60.0
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.0e-76 290.0 283 61.1
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.7e-76 289.7 296 57.8
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.5e-76 289.3 277 60.3
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 4.6e-76 288.9 229 65.5
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.6e-76 288.9 298 57.4
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 4.6e-76 288.9 216 68.5
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 7.8e-76 288.1 291 56.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.0e-75 287.7 213 68.1
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.0e-75 287.7 306 58.2
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.0e-75 287.7 207 70.5
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.3e-75 287.3 299 56.9
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 1.3e-75 287.3 287 58.2
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 2.3e-75 286.6 293 56.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.3e-75 286.6 287 57.5
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.3e-75 286.6 289 57.8
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 3.0e-75 286.2 288 57.3
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 3.9e-75 285.8 228 64.9
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 3.9e-75 285.8 292 58.6
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 3.9e-75 285.8 300 57.3
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 5.0e-75 285.4 294 57.8
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 6.6e-75 285.0 211 70.6
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 8.6e-75 284.6 282 58.2
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 8.6e-75 284.6 274 58.0
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.6e-75 284.6 210 71.0
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.5e-74 283.9 294 56.1
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.5e-74 283.9 298 57.7
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.5e-74 283.1 276 58.0
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.5e-74 283.1 208 69.7
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.3e-74 282.7 279 56.3
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 3.3e-74 282.7 293 57.3
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.3e-74 282.3 281 57.3
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 4.3e-74 282.3 222 67.6
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 5.6e-74 282.0 215 69.8
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 7.3e-74 281.6 224 65.2
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 9.5e-74 281.2 288 59.4
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 9.5e-74 281.2 286 57.7
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-73 280.8 208 68.8
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.2e-73 280.8 224 65.2
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.6e-73 280.4 205 70.2
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.6e-73 280.4 205 70.2
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.6e-73 280.4 205 70.2
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 1.6e-73 280.4 205 70.2
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.6e-73 280.4 205 70.2
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.1e-73 280.0 286 55.9
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 2.8e-73 279.6 224 64.7
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.8e-73 279.6 208 68.3
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.8e-73 279.6 294 55.4
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 4.7e-73 278.9 205 69.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.7e-73 278.9 201 71.6
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.7e-73 278.9 203 70.4
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 4.7e-73 278.9 290 56.9
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 4.7e-73 278.9 287 57.1
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 6.2e-73 278.5 204 70.1
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 6.2e-73 278.5 198 71.2
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.1e-72 277.7 295 55.9
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.1e-72 277.7 266 61.7
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.1e-72 277.7 295 56.9
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.8e-72 276.9 311 55.9
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 2.3e-72 276.6 292 55.8
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.3e-72 276.6 296 56.1
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 3.1e-72 276.2 203 69.0
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.0e-72 275.8 289 56.1
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 6.8e-72 275.0 205 68.8
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 8.9e-72 274.6 208 67.8
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.2e-71 274.2 284 57.0
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.5e-71 273.9 283 56.5
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.4e-71 272.7 270 58.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 3.4e-71 272.7 286 54.5
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 9.9e-71 271.2 215 67.0
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.3e-70 270.8 297 54.2
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-70 270.8 297 53.9
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.3e-70 270.8 296 54.4
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.2e-70 270.0 195 70.3
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 2.2e-70 270.0 181 75.1
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 2.9e-70 269.6 216 65.7
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 3.7e-70 269.2 295 53.6
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.7e-70 269.2 281 54.4
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 3.7e-70 269.2 204 68.1
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 8.3e-70 268.1 302 53.3
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.4e-69 267.3 218 65.6
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 5.4e-69 265.4 208 66.8
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.0e-68 261.9 189 70.9
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.7e-67 260.4 269 54.3
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-67 260.0 193 69.9
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 3.0e-67 259.6 223 63.2
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.9e-66 256.9 274 56.2
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 9.5e-66 254.6 346 48.3
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.2e-65 254.2 356 45.8
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.2e-63 247.7 203 65.0
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 5.8e-63 245.4 202 64.9
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.7e-62 243.8 206 62.1
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 2.9e-62 243.0 272 51.5
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 3.8e-62 242.7 165 73.3
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 4.9e-62 242.3 197 62.9
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 6.4e-62 241.9 250 57.2
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 8.4e-62 241.5 188 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 4.1e-61 239.2 217 58.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.8e-60 235.0 185 68.1
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.7e-59 233.8 379 43.3
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.3e-58 229.6 170 68.2
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 5.6e-58 228.8 176 64.8
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 8.1e-57 224.9 182 63.2
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.9e-50 203.8 215 53.0
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 3.6e-49 199.5 181 54.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 7.4e-42 175.3 183 53.6
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.6e-41 174.1 203 49.3
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.2e-39 167.9 193 50.8
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.3e-33 147.9 107 75.7
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 2.1e-33 147.1 282 39.0
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.0e-30 138.3 89 75.3
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.4e-29 134.4 219 39.7
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.4e-29 134.4 102 67.6
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.5e-28 129.8 154 55.2
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.5e-26 124.4 196 43.4
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 2.2e-22 110.5 213 35.7
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.1e-18 98.2 87 57.5
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.9e-18 97.4 78 66.7
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 8.2e-17 92.0 63 73.0
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 8.2e-17 92.0 63 73.0
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 7.2e-13 79.0 167 32.9
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 4.1e-08 63.2 42 66.7


User provided reference genes

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