Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.0e-131 471.9 239 100.0
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 1.2e-74 283.9 242 59.9
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.6e-74 282.7 234 63.7
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 2.6e-74 282.7 196 71.9
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 4.4e-74 282.0 192 71.9
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 5.8e-74 281.6 196 71.9
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.7e-73 280.0 226 63.7
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 3.7e-73 278.9 247 61.1
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 3.7e-73 278.9 242 63.6
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 4.9e-73 278.5 245 60.0
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 6.4e-73 278.1 235 63.8
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.4e-72 276.9 240 60.8
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.4e-72 276.9 234 61.1
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.4e-72 276.9 199 69.8
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 3.2e-72 275.8 239 62.3
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 4.1e-72 275.4 195 71.3
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.1e-72 275.4 235 63.4
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 5.4e-72 275.0 234 62.8
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 9.2e-72 274.2 193 68.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.6e-71 273.5 200 68.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.6e-71 273.5 190 72.1
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.6e-71 273.5 190 72.1
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.0e-71 273.1 195 67.7
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.0e-71 273.1 195 67.7
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 2.7e-71 272.7 245 59.6
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 3.5e-71 272.3 192 70.3
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 3.5e-71 272.3 244 61.5
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 4.6e-71 271.9 243 58.0
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 4.6e-71 271.9 236 61.0
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 6.0e-71 271.6 241 61.0
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 7.8e-71 271.2 239 60.7
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 7.8e-71 271.2 241 60.6
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.0e-70 270.8 233 59.7
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.0e-70 270.8 199 66.8
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.0e-70 270.8 241 60.6
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.3e-70 270.4 240 60.0
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.7e-70 270.0 244 58.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.7e-70 270.0 192 68.8
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.3e-70 269.6 187 70.1
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 2.3e-70 269.6 192 68.8
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 3.0e-70 269.2 249 60.2
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 3.0e-70 269.2 248 56.9
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.9e-70 268.9 189 71.4
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 3.9e-70 268.9 185 70.3
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 5.0e-70 268.5 241 59.3
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 6.6e-70 268.1 226 61.5
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.6e-70 268.1 241 59.8
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 8.6e-70 267.7 249 55.0
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 8.6e-70 267.7 192 68.8
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 8.6e-70 267.7 186 68.8
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.1e-69 267.3 242 60.3
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.9e-69 266.5 187 71.1
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.9e-69 266.5 190 68.4
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 3.3e-69 265.8 200 68.0
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 3.3e-69 265.8 225 61.8
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 4.3e-69 265.4 192 67.7
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 5.6e-69 265.0 210 63.8
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 7.3e-69 264.6 228 60.1
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 7.3e-69 264.6 237 60.3
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 7.3e-69 264.6 226 61.5
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 9.5e-69 264.2 236 59.3
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 1.6e-68 263.5 182 70.3
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.1e-68 263.1 240 59.2
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 2.1e-68 263.1 242 59.9
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 2.8e-68 262.7 240 58.3
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.6e-68 262.3 218 63.8
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 4.7e-68 261.9 241 58.9
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 4.7e-68 261.9 223 62.3
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.7e-68 261.9 235 62.1
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 8.0e-68 261.2 185 69.2
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.1e-67 260.8 238 61.3
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.8e-67 260.0 244 58.2
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.8e-67 260.0 184 69.6
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.3e-67 259.6 238 58.0
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 3.1e-67 259.2 238 59.7
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 3.1e-67 259.2 182 69.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 3.1e-67 259.2 244 58.6
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 5.2e-67 258.5 231 59.3
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 8.9e-67 257.7 248 57.7
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 8.9e-67 257.7 183 69.9
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 8.9e-67 257.7 199 65.3
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 8.9e-67 257.7 246 56.1
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.2e-66 257.3 204 64.2
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 2.6e-66 256.1 196 65.3
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 4.4e-66 255.4 192 65.1
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 9.8e-66 254.2 214 60.7
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 2.2e-65 253.1 170 71.8
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 2.2e-65 253.1 238 57.6
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 6.4e-65 251.5 238 58.8
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 8.3e-65 251.1 238 58.8
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.1e-64 250.8 238 56.7
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.1e-64 250.8 238 56.7
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.4e-64 250.4 183 68.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 7.0e-64 248.1 238 57.1
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 2.0e-63 246.5 244 57.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 8.6e-62 241.1 176 67.6
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 7.3e-61 238.0 199 61.8
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 7.3e-61 238.0 187 65.2
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.6e-60 236.9 236 54.2
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.8e-59 233.4 235 53.6
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.8e-59 233.4 140 74.3
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 4.0e-59 232.3 125 86.4
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 5.2e-59 231.9 144 76.4
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.0e-58 229.9 157 66.2
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 9.9e-58 227.6 196 60.7
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 1.7e-57 226.9 242 54.1
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.9e-57 225.3 198 57.1
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.2e-55 220.7 188 61.7
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.5e-55 219.2 295 48.5
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 4.6e-55 218.8 137 73.0
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.4e-51 207.2 192 57.3
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.8e-51 204.9 232 48.7
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 3.4e-50 202.6 178 59.6
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 3.4e-42 176.0 111 76.6
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 4.4e-42 175.6 133 60.9
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.3e-41 174.1 202 48.5
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.8e-39 164.9 112 66.1
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 9.6e-37 157.9 155 53.5
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 3.1e-35 152.9 87 80.5
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.5e-34 150.6 144 54.9
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 6.4e-33 145.2 178 47.8
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 6.4e-33 145.2 120 57.5
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.4e-32 144.1 121 57.0
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.2e-32 142.9 120 55.8
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.2e-32 142.9 120 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.2e-31 141.0 120 55.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.1e-31 140.2 120 55.8
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 8.1e-28 128.3 68 86.8
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 3.1e-27 126.3 147 49.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 3.1e-19 99.8 102 55.9
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 4.0e-19 99.4 168 41.1
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 4.3e-13 79.3 126 42.1
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 3.7e-12 76.3 81 48.1
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 1.4e-11 74.3 37 86.5
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 5.3e-11 72.4 94 43.6


User provided reference genes

Program Settings