Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.5e-121 438.7 212 100.0
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.3e-66 256.9 129 98.4
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.8e-24 116.3 127 50.4
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 6.3e-24 115.2 132 50.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 8.3e-24 114.8 135 47.4
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.8e-23 113.6 163 43.6
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 4.1e-23 112.5 129 45.7
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.2e-22 110.9 134 47.0
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.2e-22 110.9 134 47.0
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 2.0e-22 110.2 134 47.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.7e-22 109.8 165 42.4
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 2.7e-22 109.8 165 42.4
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.7e-22 109.8 132 47.0
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 4.5e-22 109.0 132 47.7
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.3e-21 107.5 134 44.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.2e-20 102.8 137 46.0
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 5.5e-20 102.1 123 48.8
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 7.2e-20 101.7 161 40.4
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 9.4e-20 101.3 151 42.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.2e-19 100.9 123 48.8
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 1.2e-19 100.9 136 44.9
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.6e-19 100.5 130 47.7
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.6e-19 100.5 141 45.4
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.6e-19 99.4 129 43.4
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.7e-19 99.0 141 44.0
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.7e-19 99.0 125 47.2
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 4.7e-19 99.0 129 42.6
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.0e-18 97.8 129 42.6
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.4e-18 97.4 141 44.0
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.3e-18 96.7 129 45.0
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 3.0e-18 96.3 130 47.7
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 3.0e-18 96.3 125 46.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 3.0e-18 96.3 134 43.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 4.0e-18 95.9 129 44.2
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 8.8e-18 94.7 129 45.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.2e-17 94.4 132 41.7
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.2e-17 94.4 129 44.2
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.6e-17 93.2 129 44.2
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.6e-17 93.2 129 42.6
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 2.6e-17 93.2 123 43.9
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 9.8e-17 91.3 132 43.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 9.8e-17 91.3 132 43.9
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.3e-16 90.9 150 36.7
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.3e-16 90.9 126 39.7
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.7e-16 90.5 126 42.1
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 1.7e-16 90.5 145 39.3
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 1.7e-16 90.5 134 39.6
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 2.2e-16 90.1 134 40.3
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 2.8e-16 89.7 129 45.7
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 3.7e-16 89.4 168 36.3
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 3.7e-16 89.4 125 42.4
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 3.7e-16 89.4 128 43.0
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 4.9e-16 89.0 130 38.5
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 4.9e-16 89.0 134 42.5
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.1e-15 87.8 168 37.5
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-15 87.4 122 41.8
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.4e-15 87.4 125 42.4
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.4e-15 87.4 128 42.2
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.4e-15 87.4 129 41.1
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.8e-15 87.0 134 41.8
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.8e-15 87.0 132 43.2
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.8e-15 87.0 111 47.7
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 3.1e-15 86.3 153 37.3
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 3.1e-15 86.3 131 41.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 4.1e-15 85.9 130 40.0
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 4.1e-15 85.9 134 39.6
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 7.0e-15 85.1 138 39.9
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 7.0e-15 85.1 123 43.1
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 7.0e-15 85.1 131 40.5
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 7.0e-15 85.1 129 42.6
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.6e-14 84.0 123 39.8
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.6e-14 84.0 123 39.8
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 1.6e-14 84.0 134 35.1
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.7e-14 83.2 123 41.5
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.7e-14 83.2 129 38.0
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 5.9e-14 82.0 129 37.2
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 5.9e-14 82.0 107 43.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.7e-14 81.6 125 40.0
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.0e-13 81.3 132 39.4
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.0e-13 81.3 129 41.1
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.7e-13 80.5 157 35.7
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 2.3e-13 80.1 124 41.9
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.9e-13 79.7 126 41.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.9e-13 79.7 128 37.5
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 3.8e-13 79.3 128 39.8
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 5.0e-13 79.0 106 43.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.5e-12 77.4 181 32.0
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.5e-12 77.4 131 34.4
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.5e-12 76.6 124 38.7
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 2.5e-12 76.6 112 40.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 9.5e-12 74.7 113 40.7
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.4e-10 70.9 117 37.6
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 2.3e-10 70.1 111 38.7
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 8.9e-10 68.2 151 31.8
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 5.7e-09 65.5 106 41.5
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.3e-08 64.3 119 35.3
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.2e-08 63.5 101 43.6
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 6.4e-08 62.0 101 41.6
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 5.4e-07 58.9 129 35.7


User provided reference genes

Program Settings