Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.7e-126 454.5 226 100.0
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.9e-66 256.5 129 98.4
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.3e-51 207.2 226 46.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 6.5e-51 204.9 229 50.7
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.5e-50 203.0 225 49.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.6e-49 200.3 227 48.9
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.6e-49 200.3 227 48.9
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 3.5e-49 199.1 226 48.2
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.0e-48 197.6 226 47.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.3e-48 197.2 227 47.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.8e-48 196.8 224 47.8
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.3e-46 190.7 220 46.4
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 2.2e-46 189.9 226 45.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.8e-46 189.5 229 46.3
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.8e-46 188.7 224 46.4
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 8.2e-46 188.0 224 47.3
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.8e-45 186.8 226 45.6
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.8e-45 186.8 226 47.3
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 2.4e-45 186.4 222 46.8
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 5.3e-45 185.3 229 45.9
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.0e-44 183.3 226 45.1
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 4.5e-44 182.2 229 45.4
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 5.9e-44 181.8 229 46.3
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 7.7e-44 181.4 226 46.0
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 7.7e-44 181.4 226 42.5
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.0e-43 181.0 226 45.6
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 5.0e-43 178.7 233 45.9
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 6.5e-43 178.3 228 44.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.1e-42 177.6 226 45.1
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.4e-42 177.2 222 46.4
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 7.2e-42 174.9 222 44.6
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 9.4e-42 174.5 226 43.4
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.2e-41 174.1 229 46.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.1e-41 173.3 221 45.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.1e-41 173.3 224 42.9
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 4.6e-41 172.2 228 46.1
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.6e-41 172.2 216 45.4
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 6.1e-41 171.8 226 45.6
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 7.9e-41 171.4 219 46.1
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.4e-40 170.6 226 42.9
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 3.0e-40 169.5 226 44.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 6.7e-40 168.3 229 44.5
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.1e-39 167.5 229 42.8
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.5e-39 167.2 203 44.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 2.5e-39 166.4 222 41.9
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 2.5e-39 166.4 229 44.5
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.7e-39 165.2 219 42.5
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.7e-39 165.2 221 45.2
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 5.7e-39 165.2 208 45.2
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 5.7e-39 165.2 209 45.5
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 7.4e-39 164.9 223 42.6
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 7.4e-39 164.9 225 40.4
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.3e-38 164.1 225 42.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.3e-38 164.1 222 41.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.3e-38 164.1 229 40.2
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.8e-38 162.9 222 42.3
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.8e-38 162.9 225 43.6
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 2.8e-38 162.9 224 42.0
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.7e-38 162.5 222 42.8
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.7e-38 162.5 220 44.1
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.8e-38 162.2 220 41.4
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 4.8e-38 162.2 220 41.4
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 4.8e-38 162.2 223 39.0
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 6.3e-38 161.8 219 41.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 8.2e-38 161.4 220 43.2
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 8.2e-38 161.4 228 42.1
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 8.2e-38 161.4 222 41.4
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.1e-37 161.0 221 43.9
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.8e-37 160.2 228 41.7
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.8e-37 160.2 225 42.7
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 2.4e-37 159.8 209 44.0
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.4e-37 159.8 226 40.7
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 4.1e-37 159.1 222 41.9
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 9.1e-37 157.9 223 41.7
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.0e-36 156.8 210 41.4
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.0e-36 156.8 229 40.2
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.6e-36 156.4 226 41.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 7.7e-36 154.8 228 39.5
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 8.5e-35 151.4 223 40.8
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.1e-34 151.0 229 41.9
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.5e-34 149.8 220 40.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 3.2e-34 149.4 200 42.5
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.2e-34 149.4 227 40.5
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 7.2e-34 148.3 233 40.8
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 9.4e-34 147.9 214 40.7
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 9.4e-34 147.9 194 44.3
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.6e-33 147.1 216 41.7
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 4.7e-33 145.6 226 40.7
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.9e-33 144.8 193 45.6
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 1.0e-32 144.4 193 44.0
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 3.9e-32 142.5 279 36.6
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 8.8e-32 141.4 208 41.3
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.0e-31 140.2 226 35.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.3e-30 137.5 217 39.6
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.7e-30 137.1 231 39.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.7e-30 136.0 265 34.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 1.6e-28 130.6 231 36.8
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.5e-28 129.4 175 43.4
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 8.5e-27 124.8 226 34.5
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 4.2e-26 122.5 223 36.3
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.2e-26 121.7 156 44.9
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.5e-23 114.0 168 41.1
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.7e-22 110.5 226 31.9
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 2.8e-22 109.8 214 36.0
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 6.3e-22 108.6 119 47.9
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 4.1e-21 105.9 178 38.8
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 7.2e-18 95.1 138 39.9
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 9.4e-18 94.7 207 30.9
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.4e-16 90.9 210 32.4
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-16 90.5 116 41.4
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.8e-16 90.5 220 31.8
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-14 84.3 135 38.5
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.2e-14 83.6 227 30.8
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 4.1e-13 79.3 117 41.9
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.4e-13 79.0 97 43.3
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 7.0e-13 78.6 147 34.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.0e-11 74.7 115 38.3
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 6.5e-11 72.0 115 38.3
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-10 70.9 86 44.2
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-10 70.9 86 44.2
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.5e-10 70.9 115 36.5
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 9.4e-10 68.2 97 36.1
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.2e-07 61.2 64 53.1
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.5e-07 60.8 68 45.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.5e-07 60.8 68 45.6


User provided reference genes

Program Settings