Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.7e-103 378.3 198 100.0
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 4.8e-66 255.0 170 79.4
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.4e-65 253.4 197 73.1
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.0e-64 249.6 195 70.8
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.0e-64 249.6 171 80.1
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 7.6e-64 247.7 196 71.9
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.7e-63 246.5 171 78.4
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 4.9e-63 245.0 198 68.2
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.4e-62 243.4 198 67.7
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.9e-62 243.0 196 68.9
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 4.2e-62 241.9 140 88.6
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 5.5e-62 241.5 197 70.1
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 7.1e-62 241.1 196 67.9
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 7.1e-62 241.1 197 68.0
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 1.6e-61 240.0 197 70.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.1e-61 239.6 185 69.7
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.1e-61 239.6 199 68.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.7e-61 239.2 179 73.2
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 4.6e-61 238.4 199 69.3
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 4.6e-61 238.4 196 67.3
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.3e-60 236.9 198 69.7
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.8e-60 236.5 197 68.0
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.8e-60 236.5 197 66.5
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 3.0e-60 235.7 155 80.6
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 3.0e-60 235.7 196 66.8
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.0e-60 235.7 196 66.3
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 3.0e-60 235.7 197 69.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.7e-60 234.6 200 67.5
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.7e-60 234.6 200 67.5
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 6.7e-60 234.6 193 67.4
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.7e-60 234.6 191 67.5
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-59 233.8 167 74.3
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.1e-59 233.8 198 65.2
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.1e-59 233.8 198 65.2
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.1e-59 233.8 136 86.8
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.1e-59 233.8 146 82.9
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.9e-59 233.0 201 66.7
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.5e-59 232.6 198 65.2
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 3.3e-59 232.3 198 65.7
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.3e-58 230.3 198 65.7
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.6e-58 229.9 140 82.9
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-58 229.6 179 72.1
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 3.7e-58 228.8 198 67.7
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.7e-58 228.8 156 78.2
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.1e-57 227.3 166 73.5
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.1e-57 225.7 171 70.8
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 3.1e-57 225.7 194 65.5
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 4.1e-57 225.3 196 63.8
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 4.1e-57 225.3 147 78.9
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 4.1e-57 225.3 150 80.0
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 5.3e-57 224.9 148 80.4
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 6.9e-57 224.6 196 66.3
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 6.9e-57 224.6 147 77.6
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 9.0e-57 224.2 148 81.8
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 9.0e-57 224.2 174 72.4
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 9.0e-57 224.2 171 71.3
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.2e-56 223.8 197 67.5
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.5e-56 223.4 170 74.7
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 2.0e-56 223.0 148 81.1
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 2.6e-56 222.6 199 61.8
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.6e-56 222.6 158 76.6
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 3.4e-56 222.2 171 70.8
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 3.4e-56 222.2 199 63.3
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 4.5e-56 221.9 198 63.6
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.5e-56 221.9 148 81.1
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.5e-56 221.9 170 73.5
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 5.9e-56 221.5 175 70.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.0e-55 220.7 136 83.8
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.2e-55 219.5 175 69.7
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 2.2e-55 219.5 179 68.7
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 2.9e-55 219.2 139 80.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 2.9e-55 219.2 196 65.8
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.9e-55 219.2 199 61.8
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 5.0e-55 218.4 139 83.5
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.5e-55 218.0 199 64.8
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 6.5e-55 218.0 204 63.2
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 6.5e-55 218.0 196 63.8
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 8.4e-55 217.6 141 79.4
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.1e-54 217.2 160 73.1
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.1e-54 217.2 141 80.1
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.4e-54 216.9 152 75.7
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.4e-54 216.9 156 73.7
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.4e-54 216.9 156 73.7
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.9e-54 216.5 156 73.7
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.5e-54 216.1 167 70.7
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.5e-54 216.1 152 77.6
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-54 215.7 157 73.9
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 3.2e-54 215.7 140 80.0
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 4.2e-54 215.3 151 76.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 5.5e-54 214.9 174 67.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 5.5e-54 214.9 196 65.3
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 5.5e-54 214.9 187 67.4
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 5.5e-54 214.9 167 70.1
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 5.5e-54 214.9 196 64.3
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 5.5e-54 214.9 196 62.8
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 5.5e-54 214.9 148 78.4
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 5.5e-54 214.9 151 76.2
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 9.3e-54 214.2 168 70.8
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.2e-53 213.8 198 63.1
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.6e-53 213.4 156 73.1
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.6e-53 213.4 186 68.3
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-53 213.0 138 81.9
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.7e-53 212.6 198 63.1
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.5e-53 212.2 172 68.6
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 3.5e-53 212.2 142 78.2
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.6e-53 211.8 195 64.6
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.6e-53 211.8 161 70.2
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 6.1e-53 211.5 159 75.5
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 7.9e-53 211.1 162 71.0
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 7.9e-53 211.1 162 71.0
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.0e-52 210.7 162 71.0
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.0e-52 210.7 162 71.0
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.8e-52 209.9 179 65.4
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.0e-52 209.1 170 69.4
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.9e-52 208.8 160 73.1
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.5e-51 206.8 150 74.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.5e-51 206.8 176 65.9
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.9e-51 206.5 169 69.8
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.5e-51 206.1 167 68.9
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 4.3e-51 205.3 137 77.4
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.3e-50 203.8 129 82.9
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.8e-50 201.8 114 90.4
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.8e-50 201.8 114 90.4
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.4e-49 200.3 149 73.2
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 5.3e-49 198.4 154 70.8
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 5.3e-49 198.4 197 59.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 6.9e-49 198.0 129 82.9
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 9.0e-49 197.6 134 76.9
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 2.0e-48 196.4 112 89.3
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 5.9e-48 194.9 112 87.5
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.3e-47 193.7 141 74.5
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.2e-47 193.0 178 61.2
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 3.2e-46 189.1 186 58.1
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.2e-45 187.2 145 68.3
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 3.6e-45 185.7 176 63.6
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.1e-45 184.9 198 57.1
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.8e-44 183.3 164 64.0
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.5e-43 180.3 111 84.7
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.3e-43 179.1 148 69.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 5.7e-43 178.3 141 65.2
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 7.4e-43 177.9 109 80.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.7e-42 176.8 178 59.6
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 8.2e-42 174.5 139 66.9
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 8.2e-42 174.5 153 63.4
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 9.1e-41 171.0 128 73.4
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.5e-40 168.7 156 63.5
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 5.9e-40 168.3 203 53.7
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 7.7e-40 167.9 146 64.4
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-39 166.8 178 51.7
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 3.6e-37 159.1 155 61.3
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 6.1e-37 158.3 347 35.7
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.0e-36 157.5 113 69.9
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 3.9e-36 155.6 121 66.1
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 3.9e-36 155.6 143 60.1
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.9e-31 139.4 162 56.8
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 6.1e-29 131.7 111 60.4
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 5.7e-27 125.2 85 76.5
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.2e-24 117.5 151 48.3
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.5e-24 115.9 94 68.1
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 3.5e-24 115.9 91 70.3
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.5e-24 115.9 131 55.0
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-23 113.6 85 71.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 8.5e-23 111.3 86 72.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 5.5e-22 108.6 86 70.9
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 5.5e-22 108.6 86 70.9
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 4.5e-16 89.0 89 58.4
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 9.4e-14 81.3 47 83.0
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 2.7e-13 79.7 49 79.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 1.0e-12 77.8 44 90.9
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 9.2e-09 64.7 38 78.9


User provided reference genes

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