Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 7.0e-54 213.8 114 100.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.0e-41 171.4 112 76.8
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-40 169.5 112 75.9
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.0e-40 169.1 112 75.9
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-40 168.3 112 75.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 3.4e-40 168.3 111 76.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.4e-40 167.9 112 74.1
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 4.4e-40 167.9 111 75.7
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 4.4e-40 167.9 111 75.7
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 7.5e-40 167.2 111 74.8
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 9.8e-40 166.8 112 74.1
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.3e-39 166.4 112 73.2
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.3e-39 166.4 110 75.5
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-39 166.0 111 74.8
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-39 166.0 111 74.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.7e-39 166.0 111 75.7
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.2e-39 165.6 112 74.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-39 165.2 109 76.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.9e-39 165.2 112 74.1
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 3.7e-39 164.9 112 73.2
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 4.9e-39 164.5 111 74.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.9e-39 164.5 112 73.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 6.4e-39 164.1 111 73.9
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 6.4e-39 164.1 111 73.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 6.4e-39 164.1 112 72.3
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 6.4e-39 164.1 113 71.7
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 8.3e-39 163.7 111 73.9
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 8.3e-39 163.7 112 72.3
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.4e-38 162.9 110 74.5
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-38 162.9 111 73.0
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.4e-38 162.9 112 72.3
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.4e-38 162.9 112 72.3
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.9e-38 162.5 112 72.3
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.4e-38 162.2 110 73.6
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-38 161.8 112 73.2
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 3.2e-38 161.8 110 72.7
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 3.2e-38 161.8 112 72.3
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 3.2e-38 161.8 112 71.4
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 3.2e-38 161.8 111 73.9
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 4.1e-38 161.4 111 72.1
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.1e-38 161.4 110 73.6
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 5.4e-38 161.0 112 70.5
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.1e-38 160.6 112 74.1
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 7.1e-38 160.6 112 74.1
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 9.2e-38 160.2 111 73.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.6e-37 159.5 112 71.4
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.6e-37 159.5 106 72.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-37 159.5 111 72.1
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.6e-37 159.5 112 71.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-37 159.1 112 71.4
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 2.1e-37 159.1 110 72.7
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.1e-37 159.1 112 70.5
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.1e-37 159.1 112 71.4
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.7e-37 158.7 110 70.9
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-37 157.5 112 71.4
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 6.0e-37 157.5 106 73.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.0e-37 157.5 112 73.2
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 6.0e-37 157.5 111 72.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.0e-36 156.8 111 72.1
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.0e-36 156.8 113 67.3
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.3e-36 156.4 105 74.3
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.3e-36 156.4 112 70.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.3e-36 155.6 109 70.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.3e-36 155.6 109 70.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.0e-36 155.2 112 72.3
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.0e-36 155.2 111 71.2
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.0e-36 155.2 106 74.5
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.9e-36 154.8 113 71.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.9e-36 154.8 113 71.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.1e-36 154.5 101 75.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 5.1e-36 154.5 108 71.3
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.1e-36 154.5 112 68.8
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.6e-36 154.1 111 72.1
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 6.6e-36 154.1 118 67.8
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.5e-35 152.9 111 68.5
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.5e-35 152.9 111 69.4
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.5e-35 152.9 109 71.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.5e-35 152.9 110 70.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.5e-35 152.9 101 75.2
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.9e-35 152.5 104 74.0
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.9e-35 152.5 112 70.5
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.9e-35 152.5 111 69.4
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.9e-35 152.5 109 68.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.9e-35 152.5 110 70.0
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.5e-35 152.1 112 68.8
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 2.5e-35 152.1 110 70.9
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.5e-35 152.1 110 70.0
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.5e-35 152.1 110 70.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.3e-35 151.8 110 70.0
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.3e-35 151.8 110 70.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.3e-35 151.4 101 73.3
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 7.3e-35 150.6 100 74.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.3e-35 150.6 100 74.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.3e-35 150.6 100 74.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.3e-35 150.6 100 74.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 7.3e-35 150.6 111 69.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.6e-34 149.4 111 69.4
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.1e-34 149.1 125 64.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.8e-34 148.7 100 73.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 3.6e-34 148.3 113 64.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 4.7e-34 147.9 111 67.6
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 8.1e-34 147.1 113 64.6
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 8.1e-34 147.1 108 67.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.3e-33 145.6 110 69.1
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 3.1e-33 145.2 111 69.4
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 8.9e-33 143.7 98 71.4
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 8.9e-33 143.7 111 67.6
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.5e-32 142.9 107 67.3
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-32 142.9 103 68.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.6e-32 142.1 100 70.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.6e-32 142.1 109 63.3
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 9.9e-32 140.2 103 67.0
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 9.9e-32 140.2 97 69.1
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.7e-31 139.4 110 67.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 3.8e-31 138.3 111 64.9
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 7.1e-30 134.0 96 71.9
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.6e-29 132.9 97 67.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 4.6e-29 131.3 92 69.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 8.6e-28 127.1 97 69.1
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.1e-27 126.7 103 63.1
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.6e-26 121.7 85 69.4
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.4e-25 119.8 95 64.2
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.4e-25 119.0 103 58.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 5.2e-25 117.9 108 60.2
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.8e-24 114.4 79 74.7
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.9e-23 111.3 80 68.8
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-22 109.0 77 70.1
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 2.4e-22 109.0 77 70.1
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 7.1e-22 107.5 98 57.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.8e-21 104.0 64 76.6
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.7e-20 102.8 68 75.0
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.6e-20 100.9 68 69.1
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.9e-19 99.4 68 73.5
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.1e-17 92.0 69 66.7
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.0e-17 91.7 102 51.0
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 3.8e-15 85.1 113 49.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.1e-14 83.6 56 73.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.4e-14 82.4 57 70.2
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 9.3e-14 80.5 103 45.6
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-13 80.1 76 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.1e-13 79.3 74 56.8
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 7.9e-13 77.4 111 45.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-12 75.9 73 57.5
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.9e-12 75.1 85 51.8
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.3e-11 71.6 68 57.4
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 4.0e-09 65.1 59 52.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 9.0e-09 63.9 50 62.0
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 5.8e-08 61.2 82 47.6
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 7.6e-08 60.8 40 70.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 2.2e-07 59.3 56 57.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 8.4e-07 57.4 41 70.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.4e-06 55.8 32 84.4
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.2e-06 55.5 121 30.6
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 4.2e-06 55.1 52 55.8
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 5.5e-06 54.7 33 72.7


User provided reference genes

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